PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0013983.1_g000008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 985aa MW: 110426 Da PI: 5.059 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Rmu_sc0013983.1_g000008.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Rmu_sc0013983.1_g000008.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RPVDQPQFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYANDLA GSELTEGSGA TRALLANYAQ TPRLGMTPSR TPQRTPAGKG 360 DAIMMEASNL AMLRESQTPL LGGENPQLHP SDFSGVTPRK KEIQTPNLML TPSTPGGAGL 420 TPRIGLTPAR DSFGMTPKGT PMRDELRINE DVDMHDSAKM EHRRQAELRK NLQMGLSKLP 480 QPKNEYQIVM QPVPEDNEEP EEKIEEDMSD RIARERAEEE ARQQALLRKR SKVLQRELPR 540 PPAPSVESLR KSLLRADEDK SKVVPPTSIE QANEMITKEL LSLLEHDNVK YPLDEKVDKR 600 KKKGTKRSAN GSTPTVPEIE DFEEDELKEA DSMIKEEVEY LRVAMGHEDK SLDEFVEVHK 660 TCMNDFMFFP RRNAYGASSI AGNEEKLEAL QNEFENVKKK LDDDLGKAAS LEKKVKVRTH 720 GYEMRAKEVH WPKIEETFKQ LDTAEKELEC FRALQKQEQL AASHRINNLW EEVQKQKELE 780 RTLQKRYGGL IAEVERVQHL REKYIAQEQE QKEVAARNDL ELADAAADVA VAQSTVNTSA 840 SDELAASHGE TTDPQVDGID VDAEKKDDMT VTTDVNVPNS TPSAAEGEND IPLQGTSGEG 900 SDTHLSTSDG IYPSGVAAQD SVSNGDAVSG TVDNVLPTEK LTSTDVANDQ VVGAEVAGDD 960 GLVSADATTV SAEVVDLAEN APTQI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 205 | KRRELKAAGIDNRQRKRKRK |
2 | 200 | 205 | RKRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | MYB family protein |