PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013825.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 514aa MW: 57790.6 Da PI: 7.6788

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013825.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.5e-17	146	192	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l ++vkq+G + W+ Ia+++ gR +kqc++rw+++l Rmu_sc0013825.1_g000001.1 146 KGQWTDEEDRKLMRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 192 799***************************.***********97 PP
2	Myb_DNA-binding	58.2	1.9e-18	198	240	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+++lv+a+++ G++ W+ Ia++++ gRt++ +k++w+ Rmu_sc0013825.1_g000001.1 198 KDSWTEEEEKILVEAHAEVGNR-WAEIAKRIP-GRTENAIKNHWN 240 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MEGEDGAASD HLHHHHGVYG FQNNHIQTPH QHHNQLFRPG PPLTAIDRFL WSQNNAKNKE 60 RLVSSNGFSS FGGAMGDLQT CSNWPPSSLR EASLDELLFL DHGEAMTWPP EKIQNPNMGF 120 KEDQVKVGSK GVGKKAKKGS SVPLIKGQWT DEEDRKLMRL VKQYGVRKWA QIAEKLVGRA 180 GKQCRERWHN HLRPDIKKDS WTEEEEKILV EAHAEVGNRW AEIAKRIPGR TENAIKNHWN 240 ATKRRQNSRR KNKQTDAKNG SSSSNKPPQP SILQNYIRSK NFNNKANNNS SSNATPTPSN 300 ISTTTPTSSS TLTQEEPSKI PFNIFLSDPS DLSSCEHSPL NITADSYSDE ELLFMQNFFN 360 NNNVHNHNQQ QQPLPIDNYN NGLTANPMDT TDWFVTSTPK PNMYTNRNFQ AAVHNVESHI 420 GNSTEDPRSI NPPTTHPSSD LYLSYLLNGG ASSSSSSANH DHHMGNYYNM NIDLVIHQHQ 480 AASATERREM DLIEMVSSSS SSQFAQGTNT TSFY

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MEGEDGAASD HLHHHHGVYG FQNNHIQTPH QHHNQLFRPG PPLTAIDRFL WSQNNAKNKE  60
RLVSSNGFSS FGGAMGDLQT CSNWPPSSLR EASLDELLFL DHGEAMTWPP EKIQNPNMGF  120
KEDQVKVGSK GVGKKAKKGS SVPLIKGQWT DEEDRKLMRL VKQYGVRKWA QIAEKLVGRA  180
GKQCRERWHN HLRPDIKKDS WTEEEEKILV EAHAEVGNRW AEIAKRIPGR TENAIKNHWN  240
ATKRRQNSRR KNKQTDAKNG SSSSNKPPQP SILQNYIRSK NFNNKANNNS SSNATPTPSN  300
ISTTTPTSSS TLTQEEPSKI PFNIFLSDPS DLSSCEHSPL NITADSYSDE ELLFMQNFFN  360
NNNVHNHNQQ QQPLPIDNYN NGLTANPMDT TDWFVTSTPK PNMYTNRNFQ AAVHNVESHI  420
GNSTEDPRSI NPPTTHPSSD LYLSYLLNGG ASSSSSSANH DHHMGNYYNM NIDLVIHQHQ  480
AASATERREM DLIEMVSSSS SSQFAQGTNT TSFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	1e-56	MYB family protein