PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0013612.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27355.2 Da PI: 9.8024 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdell ++++++G g W+ ++ + g++R++k+c++rw++yl Rmu_sc0013612.1_g000010.1 8 KGAWTKEEDELLRQVIEKHGEGKWHQVPFKAGLNRCRKSCRLRWLNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T +E + +++++k+lG++ W++Ia +++ gRt++++k++w++y Rmu_sc0013612.1_g000010.1 61 RGEFTVDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTY 105 899*******************.*********.************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence |
MEGFGVRKGA WTKEEDELLR QVIEKHGEGK WHQVPFKAGL NRCRKSCRLR WLNYLKPNIK 60 RGEFTVDEVD MIIRLHKLLG NRWSLIAGRL PGRTANDVKN YWNTYQRKKN QKMTSGAKKM 120 KDKSQKNTIA PLVVRPRPRT FIKRLNFLER DANLEHIPSE ENSSTSLPTA PPQTLELENV 180 IDWWKVVSED STGSIDRTTC SSLGLEDDFF TNFWVEDMVQ LSTIDGHDLF NNFYA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 8e-63 | MYB family protein |