PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013399.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-X1

Protein Properties

Length: 886aa MW: 95255.5 Da PI: 7.8641

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013399.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18	6.5e-06	73	91	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH G C+pC+ Rmu_sc0013399.1_g000001.1 73 CGRHRCERKCHVGHCDPCQ 91 ******************6 PP
2	zf-NF-X1	19.9	1.6e-06	137	154	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+++CH+GpC++C Rmu_sc0013399.1_g000001.1 137 CGNHVCSEICHPGPCGEC 154 ****************** PP
3	zf-NF-X1	22.7	2.1e-07	195	212	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+Cq+ CH+G+CppC Rmu_sc0013399.1_g000001.1 195 CGVHQCQQVCHTGDCPPC 212 ****************** PP
4	zf-NF-X1	17.7	8e-06	291	308	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC Rmu_sc0013399.1_g000001.1 291 CGQHSCESLCHSGHCPPC 308 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence
KPLEKEVPGK GMSKDDLCPH MCVLQCHPGP CPPCKAFAPP RLCPCGKKTI TTRCSDRTSV 60 LTCGNLCSKL LDCGRHRCER KCHVGHCDPC QVPFNASCFC LKKLEVVLCG EMIVKGEVKA 120 EDGVFSCSSS CGKKLSCGNH VCSEICHPGP CGECILMPRN IKTCHCGKTS LQEERQSCLD 180 PIPTCSQICD KTLPCGVHQC QQVCHTGDCP PCLVKVTQKC RCESTSRNVE CCKTTMENEK 240 FTCDKPCGRK KNCGRHRCSE RCCPLSNSNN HLSGDWDPHL CSMPCGKKLR CGQHSCESLC 300 HSGHCPPCLD TIFTDLTCAC GRTSIPPPLP CGTPPPSCQL PCSVPQPCGH SSSHSCHFGD 360 CPPCSVPVAK ECIGGHVVLR NIPCGSRDIK CNKLCGKMRQ CGMHACGRTC HPPPCECSSS 420 AEAGSKSSCG QKCGAPRRDC RHTCTAPCHP YASCPDVRCD FLVTITCSCG RIIANVPCDS 480 GGSTASFNAD TVFEASIIQK LPVPLQPVEA TNKKIPLGQR KLTCDDECAK LERKRVLADA 540 FDIVPPNLDA LHFGETTVMS ELLSDLFRRD PKWVLSVEER CKQLVLGKSK GATSGLRVHV 600 FCPMLKEKRD VVRVIADRWK LAVQAAGWEP KRFIVVHATP KSKVPARVLG VKGTTTVNAS 660 QPPAFDHLVD MDPRLVVSFP DLPRDADISA LVLRFGGECE LVWLNDKNAL AVFNDPARAA 720 TAMRRLDNGT LYHGAIAVLS AASAGSNAWG GGGIAKEGAY TALKGNAWKK AVIRESSWRE 780 DSWGEEEWSG GSADVQASVW KKEAPIAASL NRWSVLDSEV ALGSSSVSPT VEDSGKQTAA 840 RLISMVESNA SGSTSSNASG STSAGQIGGT ITETSEVVDD WEKAYE

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence

KPLEKEVPGK GMSKDDLCPH MCVLQCHPGP CPPCKAFAPP RLCPCGKKTI TTRCSDRTSV  60
LTCGNLCSKL LDCGRHRCER KCHVGHCDPC QVPFNASCFC LKKLEVVLCG EMIVKGEVKA  120
EDGVFSCSSS CGKKLSCGNH VCSEICHPGP CGECILMPRN IKTCHCGKTS LQEERQSCLD  180
PIPTCSQICD KTLPCGVHQC QQVCHTGDCP PCLVKVTQKC RCESTSRNVE CCKTTMENEK  240
FTCDKPCGRK KNCGRHRCSE RCCPLSNSNN HLSGDWDPHL CSMPCGKKLR CGQHSCESLC  300
HSGHCPPCLD TIFTDLTCAC GRTSIPPPLP CGTPPPSCQL PCSVPQPCGH SSSHSCHFGD  360
CPPCSVPVAK ECIGGHVVLR NIPCGSRDIK CNKLCGKMRQ CGMHACGRTC HPPPCECSSS  420
AEAGSKSSCG QKCGAPRRDC RHTCTAPCHP YASCPDVRCD FLVTITCSCG RIIANVPCDS  480
GGSTASFNAD TVFEASIIQK LPVPLQPVEA TNKKIPLGQR KLTCDDECAK LERKRVLADA  540
FDIVPPNLDA LHFGETTVMS ELLSDLFRRD PKWVLSVEER CKQLVLGKSK GATSGLRVHV  600
FCPMLKEKRD VVRVIADRWK LAVQAAGWEP KRFIVVHATP KSKVPARVLG VKGTTTVNAS  660
QPPAFDHLVD MDPRLVVSFP DLPRDADISA LVLRFGGECE LVWLNDKNAL AVFNDPARAA  720
TAMRRLDNGT LYHGAIAVLS AASAGSNAWG GGGIAKEGAY TALKGNAWKK AVIRESSWRE  780
DSWGEEEWSG GSADVQASVW KKEAPIAASL NRWSVLDSEV ALGSSSVSPT VEDSGKQTAA  840
RLISMVESNA SGSTSSNASG STSAGQIGGT ITETSEVVDD WEKAYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein