PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013199.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 414aa MW: 47981.5 Da PI: 8.3818

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013199.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.6e-17	56	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fYn+YAk +GF+vr ++++ s + g++t+ ++vCs +gkr+e+ + +++ r++++etr +C + +kv+ ++ + ++v+++ Rmu_sc0013199.1_g000005.1 56 SFYNAYAKAMGFNVRSDYKRLSiRIIGRVTSLRLVCSAQGKRREKYISnEKRLRKPKKETRFNCPCLFKVRYRSnINAYMVDDF 139 5****************9998999************99987735667899*************9899*** PP FAR1 82 eleHnHela 90 + +H+la Rmu_sc0013199.1_g000005.1 140 ITIYSHQLA 148 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGKEFKT VEEAESFYNA 60 YAKAMGFNVR SDYKRLSIRI IGRVTSLRLV CSAQGKRREK YISNEKRLRK PKKETRFNCP 120 CLFKVRYRSN INAYMVDDFI TIYSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP 180 CHTYEYIVDR SGGFKNVEFI MKDLYNKLDS RRQEILLEGD AEAALAYMRG KVATDSHFYC 240 KFSIDEDNRM ANMFWRDSNS LVDYTCFGDV LVFDSTYKTN PYEKPLVLFV GSNNHLSTIG 300 FGLSLLMDET IETYTWDLET FISSMNNKRP VAVLTDGDEA MGMAIEVVLP GCPHRLCTWH 360 IAKNARRHLP KNSVFSEFRR CMWDEVTPDG FEKRWQKRHA RRKNVDKTEL ETFG

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGKEFKT VEEAESFYNA  60
YAKAMGFNVR SDYKRLSIRI IGRVTSLRLV CSAQGKRREK YISNEKRLRK PKKETRFNCP  120
CLFKVRYRSN INAYMVDDFI TIYSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP  180
CHTYEYIVDR SGGFKNVEFI MKDLYNKLDS RRQEILLEGD AEAALAYMRG KVATDSHFYC  240
KFSIDEDNRM ANMFWRDSNS LVDYTCFGDV LVFDSTYKTN PYEKPLVLFV GSNNHLSTIG  300
FGLSLLMDET IETYTWDLET FISSMNNKRP VAVLTDGDEA MGMAIEVVLP GCPHRLCTWH  360
IAKNARRHLP KNSVFSEFRR CMWDEVTPDG FEKRWQKRHA RRKNVDKTEL ETFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-57	FAR1 family protein