PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013047.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 357aa MW: 40825 Da PI: 7.4278

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013047.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.8e-50	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+GfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k+ +e+ewyfF++rd+ky++g+r+nra+ gyWk Rmu_sc0013047.1_g000009.1 15 LPAGFRFHPSDEELIVHYLKNKVTSSPLPA-TIITELDLYKYNPWELPPKALFGEEEWYFFTPRDRKYPNGTRPNRAAGLGYWK 97 799*************************.89**********96666789************************* PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk+++s+ +++ +g+kk Lvfy+g+ pkg+kt+W+m+eyrl Rmu_sc0013047.1_g000009.1 98 ATGTDKHIFSScGTKSIGVKKALVFYTGHPPKGVKTEWIMNEYRL 142 ******988889*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MAEMEQTIEN HNIQLPAGFR FHPSDEELIV HYLKNKVTSS PLPATIITEL DLYKYNPWEL 60 PPKALFGEEE WYFFTPRDRK YPNGTRPNRA AGLGYWKATG TDKHIFSSCG TKSIGVKKAL 120 VFYTGHPPKG VKTEWIMNEY RLLDTTIWST TSKQKGSMRL DDWVLCRVRQ KCNNSRNIWE 180 DQNTTPSYKL SGHFRQGVDE QEASPSIEMA RSYLYKDCPM LPYIFASQKV LPTIKTTSSI 240 SFQDTTENRK SCSPTPVYQE ADSNKIINDG EFLVSSLDSL INPLKRKPEG NDQRRSSVAP 300 SKKICNRDDQ KEEISNGSMI NPWGIDNQFG ADSFNADQWS SMIQYPELSQ LIGFPCN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MAEMEQTIEN HNIQLPAGFR FHPSDEELIV HYLKNKVTSS PLPATIITEL DLYKYNPWEL  60
PPKALFGEEE WYFFTPRDRK YPNGTRPNRA AGLGYWKATG TDKHIFSSCG TKSIGVKKAL  120
VFYTGHPPKG VKTEWIMNEY RLLDTTIWST TSKQKGSMRL DDWVLCRVRQ KCNNSRNIWE  180
DQNTTPSYKL SGHFRQGVDE QEASPSIEMA RSYLYKDCPM LPYIFASQKV LPTIKTTSSI  240
SFQDTTENRK SCSPTPVYQE ADSNKIINDG EFLVSSLDSL INPLKRKPEG NDQRRSSVAP  300
SKKICNRDDQ KEEISNGSMI NPWGIDNQFG ADSFNADQWS SMIQYPELSQ LIGFPCN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-78	NAC family protein