PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0012984.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 552aa MW: 63161.4 Da PI: 5.7815

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0012984.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.7	1.6e-09	164	209	7	55
AP2 7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 r++ + rW A++ k k ++g+f+t eeAa+a++ a k +g Rmu_sc0012984.1_g000013.1 164 RRYGDNMRWQARLGKG----KDtKGLYVGTFDTQEEAARAYDIAVIKCRG 209 6777799***6663....236*******************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MASDNFMNQG ENASGSGTKS AEIKRKRCPT KKSKRTLFGE KSDNVLHQEK NLTGSGLNSV 60 KVQRKRPPTK KGKKASGHQR SSRFRGVTRY PEHFEAFLWD NSDPQVKGKT GGFREEEQAA 120 RAHDLAALKY WGDSTPLNFP VSGYMKELKE MQAYTKKDYL LHIRRYGDNM RWQARLGKGK 180 DTKGLYVGTF DTQEEAARAY DIAVIKCRGG WEAVTNFDLS HYDVEGILES PNIPIENGAS 240 KFIRWTTADH IIQSRRTTNN VAVSQLQVDS SGNNPNITPT APPLFEPTVQ SLETHYNSNP 300 EQQYTCPSLN PNQNNDQIQI FQFPQYFKNP NFEFDHLPCY QKPNFPINPS FNNWGNHGEN 360 EQIENEQIEP SLQFQLILTP ENHELQFHQY NSDNSQPHLP QNPSSSSLQD FQNPENHEQI 420 EPSLQFQPIL TPENHEFQFH QHNSDNYQPH LPQNPCSSSL QDFQNPNCHE NPNIFRELTN 480 LQSGSDIREF PSGQEPVASL TMMGTNESHC DFTNTVEENR NFAEDFRVDN SDLDISSSSW 540 FEMLMTLNSS DF

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MASDNFMNQG ENASGSGTKS AEIKRKRCPT KKSKRTLFGE KSDNVLHQEK NLTGSGLNSV  60
KVQRKRPPTK KGKKASGHQR SSRFRGVTRY PEHFEAFLWD NSDPQVKGKT GGFREEEQAA  120
RAHDLAALKY WGDSTPLNFP VSGYMKELKE MQAYTKKDYL LHIRRYGDNM RWQARLGKGK  180
DTKGLYVGTF DTQEEAARAY DIAVIKCRGG WEAVTNFDLS HYDVEGILES PNIPIENGAS  240
KFIRWTTADH IIQSRRTTNN VAVSQLQVDS SGNNPNITPT APPLFEPTVQ SLETHYNSNP  300
EQQYTCPSLN PNQNNDQIQI FQFPQYFKNP NFEFDHLPCY QKPNFPINPS FNNWGNHGEN  360
EQIENEQIEP SLQFQLILTP ENHELQFHQY NSDNSQPHLP QNPSSSSLQD FQNPENHEQI  420
EPSLQFQPIL TPENHEFQFH QHNSDNYQPH LPQNPCSSSL QDFQNPNCHE NPNIFRELTN  480
LQSGSDIREF PSGQEPVASL TMMGTNESHC DFTNTVEENR NFAEDFRVDN SDLDISSSSW  540
FEMLMTLNSS DF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	74	KKSKRTLFGEKSDNVLHQEKNLTGSGLNSVKVQRKRPPTKKGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-46	AP2 family protein