PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0012046.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 312aa MW: 35903.9 Da PI: 8.9328 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.7 | 6e-21 | 38 | 120 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++ +vCsk+g+++ + kk r+r+ tr++Cka+++v ++ gk+++t +++ Rmu_sc0012046.1_g000002.1 38 FYKSYAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRNRTRVNCKARIVVVRRAtIGKYVITIFDEG 114 *************99998887..9****************998888.....999***********99888889*********** PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0012046.1_g000002.1 115 HSHPLT 120 ****97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence |
MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSFTSEKKNG 60 VIVRKAYVCS KQGTSKVTGK KRNRNRTRVN CKARIVVVRR ATIGKYVITI FDEGHSHPLT 120 TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENR ITHIFWADAI SRRSYKFYGD 240 VVIFDTTYNT NMYSLIFAPL VGVNNHGQII ILACAFLSNE TTDSFVWFFK EFLDAMPGDA 300 LSRFDRPVYA SY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 86 | KRNRNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-51 | FAR1 family protein |