PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0012046.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 29757 Da PI: 9.2612 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.2 | 4.1e-21 | 38 | 120 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++ +vCsk+g+++ + kk r+r+ tr++Cka+++v ++ gk+++t +++ Rmu_sc0012046.1_g000001.1 38 FYKSYAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRNRTRVNCKARIVVVRRAtIGKYVITIFDEG 114 *************99998887..9****************998888.....999***********99888889*********** PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0012046.1_g000001.1 115 HSHPLT 120 ****97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSFTSEKKNG 60 VIVRKAYVCS KQGTSKVTGK KRNRNRTRVN CKARIVVVRR ATIGKYVITI FDEGHSHPLT 120 TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENM ITHIFWADAI CRRSYKFYGD 240 VVIFDTTYNT NMYSLIF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 86 | KRNRNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-34 | FAR1 family protein |