PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0012005.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 1284aa MW: 140873 Da PI: 4.2223

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0012005.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	6e-06	1259	1282	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + Cr ++++G+Ck G++C + H+ Rmu_sc0012005.1_g000009.1 1259 KGRVCR-YFESGHCKKGSSCDYLHP 1282 7789.8888***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1284 aa Download sequence
MAAEAEREEV EAVEMVEAER EEVGGVAEEV QVDREEEEEV KLEGEGVELE KAEVELEREE 60 IREEEEKAEE QGHVTDMVDE TIETEGRAEA EAVDGGHVSD LNLKDTVDQT LETSDGADVE 120 DTFETTDAVE EGKGNEAEVH EVNATDMGDE TNGTEAVEEG KEGVVTDMVD ETVESEAMEE 180 EGNGVAAEGH EANVTVTESD EIIETTEAVE EGKVSEAEGD EANVKDMVHE SIETEAAGEE 240 EQKAEVEGHE ADAAIEAEEV GQEAEAEGEE QNLNVKDMVD GAVETQVSRE EEQEAEVEEN 300 EANTTIEAEE AGQEVEAEGG EWNLNVKDMV DDTIQTQVSG EVGQEAEAEG GEQNLNVKDM 360 VDDTIQTQVS GEEEQEAEVE GHELTATVTV DEADEAVVTT EAVEADVSDD VMEETTEAEE 420 TEAAEGAEEM EADEMEAAEE EEAEEMEMVE DTNTSGVGGK RKRRKNSKAA ASEKVLSKKK 480 EEDVCFICFD GGELVLCDRR GCPKAYHPSC VNRDEAFFRA KGRWNCGWHL CSNCEKNAHY 540 MCYTCTFSLC KACTKDAVIL CIKGNKGFCE TCMKTVMLIE KNEHGNKEKD AVDFDDKSSW 600 EYLFKDYWTD LKERLSLTLD DLSQAKNPWK GSAGHANKHG SHDEPYDANI DGGSDSDNSE 660 NLDSTNSKRR KGKKRLKTRA KGKNSSSPAT GSGGRYADDN TEWASKELLE FVMHMRNGDS 720 SALSQFDVQA LLLEYIKRNK LRDPRRKSQI ICDLRLQSLF GKPRVGHFEM LKLLESHFFM 780 KEDSQVDDHQ GSVVDTEGNQ LEADGHSDTP AKASKDKKRK RKKNEPQSNV EDFAAIDIHN 840 INLIYLRRNL VEDLLEDTDN FQEKVAGSFV RIRISGSGQK QDLYRLVQVI GTCKAAEPYK 900 VGKRMTDILL EILNLNKTEI VTIDIISNQE FTEDECKRLR QSIKCGLINR LTVGDVQEKA 960 VVLQPVRVKD WLETETVRLQ HLRDRASEKG RRKEYPFLFQ QFTACWLIGS SVTNCHLIWC 1020 RGAPSQKIEP NNATNVPAQH PSHGYWPPTN NGTSSINTGN SAGNFPAQGF SGVPNSDAWR 1080 PPVPSNQSYI QPPAQPQVPW GPSVSDNQSA VPRMGQESQN SGWVPVAGNP NVAWGGPVPG 1140 NSNMNWAAPS QSPGWSASGQ VPVRGNAVPS WAPPPGQGPP SVSANPGWAP PGQGPALGNA 1200 NSGWSAPTAN QTQNGDRFSN QRDRGSHGGD SGFGGGKPWN RQPSFGGGGG GGSSRPPFKG 1260 RVCRYFESGH CKKGSSCDYL HPDH

Sequence ? help Back to Top

Protein Sequence Length: 1284 aa Download sequence

MAAEAEREEV EAVEMVEAER EEVGGVAEEV QVDREEEEEV KLEGEGVELE KAEVELEREE  60
IREEEEKAEE QGHVTDMVDE TIETEGRAEA EAVDGGHVSD LNLKDTVDQT LETSDGADVE  120
DTFETTDAVE EGKGNEAEVH EVNATDMGDE TNGTEAVEEG KEGVVTDMVD ETVESEAMEE  180
EGNGVAAEGH EANVTVTESD EIIETTEAVE EGKVSEAEGD EANVKDMVHE SIETEAAGEE  240
EQKAEVEGHE ADAAIEAEEV GQEAEAEGEE QNLNVKDMVD GAVETQVSRE EEQEAEVEEN  300
EANTTIEAEE AGQEVEAEGG EWNLNVKDMV DDTIQTQVSG EVGQEAEAEG GEQNLNVKDM  360
VDDTIQTQVS GEEEQEAEVE GHELTATVTV DEADEAVVTT EAVEADVSDD VMEETTEAEE  420
TEAAEGAEEM EADEMEAAEE EEAEEMEMVE DTNTSGVGGK RKRRKNSKAA ASEKVLSKKK  480
EEDVCFICFD GGELVLCDRR GCPKAYHPSC VNRDEAFFRA KGRWNCGWHL CSNCEKNAHY  540
MCYTCTFSLC KACTKDAVIL CIKGNKGFCE TCMKTVMLIE KNEHGNKEKD AVDFDDKSSW  600
EYLFKDYWTD LKERLSLTLD DLSQAKNPWK GSAGHANKHG SHDEPYDANI DGGSDSDNSE  660
NLDSTNSKRR KGKKRLKTRA KGKNSSSPAT GSGGRYADDN TEWASKELLE FVMHMRNGDS  720
SALSQFDVQA LLLEYIKRNK LRDPRRKSQI ICDLRLQSLF GKPRVGHFEM LKLLESHFFM  780
KEDSQVDDHQ GSVVDTEGNQ LEADGHSDTP AKASKDKKRK RKKNEPQSNV EDFAAIDIHN  840
INLIYLRRNL VEDLLEDTDN FQEKVAGSFV RIRISGSGQK QDLYRLVQVI GTCKAAEPYK  900
VGKRMTDILL EILNLNKTEI VTIDIISNQE FTEDECKRLR QSIKCGLINR LTVGDVQEKA  960
VVLQPVRVKD WLETETVRLQ HLRDRASEKG RRKEYPFLFQ QFTACWLIGS SVTNCHLIWC  1020
RGAPSQKIEP NNATNVPAQH PSHGYWPPTN NGTSSINTGN SAGNFPAQGF SGVPNSDAWR  1080
PPVPSNQSYI QPPAQPQVPW GPSVSDNQSA VPRMGQESQN SGWVPVAGNP NVAWGGPVPG  1140
NSNMNWAAPS QSPGWSASGQ VPVRGNAVPS WAPPPGQGPP SVSANPGWAP PGQGPALGNA  1200
NSGWSAPTAN QTQNGDRFSN QRDRGSHGGD SGFGGGKPWN RQPSFGGGGG GGSSRPPFKG  1260
RVCRYFESGH CKKGSSCDYL HPDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	460	465	KRKRRK
2	817	822	KKRKRK
3	817	823	KKRKRKK
4	817	824	KKRKRKKN
5	819	823	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein