PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011904.1_g000015.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 496aa MW: 54086.2 Da PI: 4.8765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011904.1_g000015.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	311	353	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+++L Rmu_sc0011904.1_g000015.1 311 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLREL 353 79*******************66......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MSSGGVWMNR EGEDAVSSWT SNPHNNNETE PKDLTLASFK AMLEGDWYLN NNNNNVVVLN 60 QDNINCFSSN PFQMDTSASC SPSMAFTLLN SNPNPNSKSC FSSLRNSNPF DNNFNSVGES 120 ELLTQLQQQN EALMNLAALN PHSQVAATPA LSSGTEFPSN QLLPASGNTA GVFSNAGFES 180 SGSALLLNRA EDMSFPCSMG GAQPTLYQKR AALRQNSTGS SGCDILGNLE ISGPSYSGLG 240 LEEKRKRRHN ESEMEDDMSS LNFYDSDGQA EEEEEGNVNN AAGGGYSNAN SSVTDGDFKG 300 KKTGLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL RELLGRIDDL 360 HKELESDAPG SSLQPSTNFN PLTPNSLTYP GRIKEELRPS SLPTPKSQQP AAKVDVQIRE 420 GRALNIRMLS PRRPGLLLST MRALDNLGLD IQQAVISCFN GFALDVFQAE QSRESHFLPE 480 QIRAILLKSA GFDGMM

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MSSGGVWMNR EGEDAVSSWT SNPHNNNETE PKDLTLASFK AMLEGDWYLN NNNNNVVVLN  60
QDNINCFSSN PFQMDTSASC SPSMAFTLLN SNPNPNSKSC FSSLRNSNPF DNNFNSVGES  120
ELLTQLQQQN EALMNLAALN PHSQVAATPA LSSGTEFPSN QLLPASGNTA GVFSNAGFES  180
SGSALLLNRA EDMSFPCSMG GAQPTLYQKR AALRQNSTGS SGCDILGNLE ISGPSYSGLG  240
LEEKRKRRHN ESEMEDDMSS LNFYDSDGQA EEEEEGNVNN AAGGGYSNAN SSVTDGDFKG  300
KKTGLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL RELLGRIDDL  360
HKELESDAPG SSLQPSTNFN PLTPNSLTYP GRIKEELRPS SLPTPKSQQP AAKVDVQIRE  420
GRALNIRMLS PRRPGLLLST MRALDNLGLD IQQAVISCFN GFALDVFQAE QSRESHFLPE  480
QIRAILLKSA GFDGMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	320	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-95	bHLH family protein