PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011720.1_g000009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25304.6 Da    PI: 7.6282
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011720.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.5e-28959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s
  Rmu_sc0011720.1_g000009.1  9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                               68***********************************************86 PP

2K-box51.44.8e-189117318100
                      K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                + ++a+L kei    +++R++ Ge+L+ L+l+eLqqLe+ Le++l ++ +kK e ++++i elqk   +l een++Lr++++e
  Rmu_sc0011720.1_g000009.1  91 NSNYARLSKEIAAKSHQLRQMRGEELHGLKLEELQQLENSLESGLGRVIEKKGEKIMKEITELQKNAVQLIEENERLRQQVME 173
                                56899***************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHR LHSKNLDKLE QPSLELQLVE NSNYARLSKE IAAKSHQLRQ MRGEELHGLK  120
LEELQQLENS LESGLGRVIE KKGEKIMKEI TELQKNAVQL IEENERLRQQ VMERTDGRRR  180
HADSENRITE EGQSSESVTN LCNSNNAPQD YDSSDTSLKL G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-87MIKC_MADS family protein