PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0011709.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 1371aa MW: 155401 Da PI: 6.0227 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.3 | 1.3e-22 | 1227 | 1287 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDg WrKYGqKe+ gs++pr+Y+rCt + gC+++k+v+ ++ pk eitY+g+H++ Rmu_sc0011709.1_g000003.1 1227 LDDGQVWRKYGQKEILGSPYPRAYFRCTRKydqGCQATKRVQLVQDTPKEYEITYKGNHTC 1287 58**************************998899*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1371 aa Download sequence |
MAASSSPSSG GGWNYDVFLN FRGEDTRKIF VGHLHKALDL EAINAFIDSE DLRKGNDLSE 60 LLTAIEDSRL SIVVFSQNYA SSKWCLKELV KILECMSTKK HLVVPIFYEV DPSDIRKVNG 120 RFAEAFAKHE HDSNADMEEV HMWKSALTEA TNLSGWDSRN YKDDAKLIEK IVEDISKKLV 180 HIRSNKVSNL VGMDSHIAKM SSLLDLGEDD VRVVGVYGMP GIGKTTIARA IYDELVCLFD 240 HYCFLENVKE GFKHNGAIHM QEELLSRIFE KSVRSLGTLS RGSKMIMDRL SKKKVLLVLD 300 DVENFNQIEE LLGKQHSFGS GSRIIVTTRD IQSLSGVNER YSPMFLSDGE ALELFWQYAF 360 RTNQPTREYD PLSRRAVEYA QGLPLALKVL GASLDGKSIR EWEDELEKIK EIPHKEIQGV 420 LRTSFDGLDP SQQEIFLDIA CFFRGMDEGY VIKILENCGF YPHSGLQVLR DRALLTISYG 480 NRLEMHDLIQ DMGWQIVRQQ SIKEPGKRSR LWTYEDVDRV LAQNTATEAV EGIMLDLSKS 540 KDVDIDAEAF VRMTNLRLLL IGYNHYIDFN AKDFPLELLH QPRDECKQHV SGVVKFLSRD 600 LRYLMWHGCP LKSLPSNFGP KNLVDLDMRF SHIEQLWEGI KPFKKLKFIN LSHSHYLTTT 660 PDFTEATNVE TLVLDGCSSL LDVNSSISAL KNLVFLCLRG CKELENLPSS IFLKSLKILD 720 LSGCSNLVKF PEISGIMEDL SEIFLNETAI EELPSSIERL QGLVLLHLRN CRSLVRLPDN 780 ICNLVRLKDL TLSGCSKLYH LPENLGNLES LMYLEVEGSG IRELPFSILC LKRLKALSCD 840 GCKEMTMPFS SWSSSIEEYN CRYSGLLHLD LSDSNLWELS DGIAHLSALK TLELRRTNLE 900 RLPATMNQLR RLTRLELEAC KRLKSIPELP SSINYIDAHD CRALETVAKP NTRCSMNLCF 960 IFSNCLQLVQ TNLFRDIVET HSHHQGDYRL LLSFNMSLPG SEIPDWFNFQ CRGSSFTVQL 1020 PPNWFDNKFL GFAICAVGDI KGSQNDASDL SALCHCSLKG NHGQYSFSST LLDWGFTTDR 1080 ILKSDHMFMA YVPWSEYRFI EEGKLVNERY FTEATFEIVV ENRVDRHGFG TVINRHCITS 1140 CGVRFFHGDY MEEQILTISE TKSHNDSCDI LSVSRKGKEG VGVRLEESPA EGSSAGESKK 1200 RPGSEGQKGS NKRRKSPESW TVVSNTLDDG QVWRKYGQKE ILGSPYPRAY FRCTRKYDQG 1260 CQATKRVQLV QDTPKEYEIT YKGNHTCVNM TMIMGASDPA TWPTPVCSKK EHGDLSSSLS 1320 LIPFVPEKKE DCKEGTTASG LVGNVNDTSD MWTDFESPEF VFPDLGIEQS P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1199 | 1215 | KKRPGSEGQKGSNKRRK |
2 | 1212 | 1239 | KRRKSPESWTVVSNTLDDGQVWRKYGQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12020.1 | 1e-115 | WRKY family protein |