PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011487.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 335aa    MW: 37567.6 Da    PI: 6.5189
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011487.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1254110155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Rmu_sc0011487.1_g000002.1  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 110
                                57*******************99998898888888********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MAKLSHQNQK TNASNNATTT AAVNNANAAN KTVVTKVKRT RRSVPRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLA  120
TYHKEMNDME GQSREEYIGS LRRKSSGFSR GVSKYRATQE EAATAYDMAA IEYRGLNAVT  180
NFDLSRYIKW LKPNGPNNDI IAQTSNPNVE AKLVGNVTQN PNDQDQTGLG FFHNLAYSPP  240
EEITMTKLPR PTTATSALGL LLQSSKFKEM MEMTTATDSS MTSSSLPELP QCTFPDDIQT  300
YFDCQDSTSY GDGDDAMFSE LNSYIPSMFQ CDFTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-66AP2 family protein