PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011355.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 889aa MW: 100552 Da PI: 7.8417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011355.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.3	1.4e-14	75	168	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwev 78 kfY+ Y+ +GF++r++k + +g++ +r +v sk+g++++ +++ ++++r +r +tr +C a ++v+ +k + ++v Rmu_sc0011355.1_g000001.1 75 KFYEIYSAALGFRLRRQKCDRG-LSGTVLRRMWVSSKQGQKNKPRNNqvrglSSNSRPPRHSTREKCMAAFVVRYSKeLDAYYV 157 6***************9998.8888*********999999889999899999*************99899 PP FAR1 79 tkleleHnHel 89 +++ +eH+H+l Rmu_sc0011355.1_g000001.1 158 KSFTTEHTHDL 168 *******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence
VGVAMSNDGN IIDVESGEED DSSVQDCNME TEDIETTEET YGADGPFEYN GKNFRELTVK 60 DFDGTYFKTI DDAEKFYEIY SAALGFRLRR QKCDRGLSGT VLRRMWVSSK QGQKNKPRNN 120 QVRGLSSNSR PPRHSTREKC MAAFVVRYSK ELDAYYVKSF TTEHTHDLPK PNKVQSLLSH 180 CVGKKVDLAE AVAMPKAKES IKTSVAHEHH PSGGNECVAS TKELDLAHAV AVRKAKESIN 240 TSAAYVYRQS GGNEFVGLTK ESDLEQGVAV CKGSINSTAA SQHMVQPAGG HAFVSLTNRS 300 DLEQGVAMGK GSINSAAASQ HMVEPAGGHA FVSLTNRSDL VQTVAMHKES ITTSSAYEYI 360 VHPAGGYEFV DLMKRELYNS MDIERREALL NGDAQAAIAF MNARAAEDPE FFCKFSVGER 420 GRLGNLFWRD SCSLLDYTRF GDVLIFDCTF KTNIYQRPLA VFVGANNHRG TVLFGSAILV 480 DDTIDTYKWA LQTFLGAMKD KKPISVLTDG DDKIQNAVVE VFPKARHRLC SWHIEKNLGT 540 IIKDPDVVKA FTQFLYNAIP PDEWELGWKS MVETYGLQDN PWINMMYHRR KRWAEAFFKG 600 HFFGGMSSMQ RCQGIHRNLE SALGKYDRFC EYIPRMDKTL RKMRNNISVD DLKCENSKPV 660 IITHMRSLEQ QIAEIFTHDI YLLIMHQIDW ERKYIITKSE PYAQGDGKVF HLTQYDLPHR 720 HWTVNYHHSI SKVWFLCSCK LFQSDGIPCA HIFSVMKAEL ILKLPDSLVL KRWTMDVGKP 780 VNLHNLSDRN LQMVRYASLA SEIKSICFPA SMTEGGTKKM KCEIAKLAKP AHDRRESQNH 840 SLLQNLIHRH QLHVGSDAHS FTGFSVGINA EHYARSLPPG EFRTYFYWV

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence

VGVAMSNDGN IIDVESGEED DSSVQDCNME TEDIETTEET YGADGPFEYN GKNFRELTVK  60
DFDGTYFKTI DDAEKFYEIY SAALGFRLRR QKCDRGLSGT VLRRMWVSSK QGQKNKPRNN  120
QVRGLSSNSR PPRHSTREKC MAAFVVRYSK ELDAYYVKSF TTEHTHDLPK PNKVQSLLSH  180
CVGKKVDLAE AVAMPKAKES IKTSVAHEHH PSGGNECVAS TKELDLAHAV AVRKAKESIN  240
TSAAYVYRQS GGNEFVGLTK ESDLEQGVAV CKGSINSTAA SQHMVQPAGG HAFVSLTNRS  300
DLEQGVAMGK GSINSAAASQ HMVEPAGGHA FVSLTNRSDL VQTVAMHKES ITTSSAYEYI  360
VHPAGGYEFV DLMKRELYNS MDIERREALL NGDAQAAIAF MNARAAEDPE FFCKFSVGER  420
GRLGNLFWRD SCSLLDYTRF GDVLIFDCTF KTNIYQRPLA VFVGANNHRG TVLFGSAILV  480
DDTIDTYKWA LQTFLGAMKD KKPISVLTDG DDKIQNAVVE VFPKARHRLC SWHIEKNLGT  540
IIKDPDVVKA FTQFLYNAIP PDEWELGWKS MVETYGLQDN PWINMMYHRR KRWAEAFFKG  600
HFFGGMSSMQ RCQGIHRNLE SALGKYDRFC EYIPRMDKTL RKMRNNISVD DLKCENSKPV  660
IITHMRSLEQ QIAEIFTHDI YLLIMHQIDW ERKYIITKSE PYAQGDGKVF HLTQYDLPHR  720
HWTVNYHHSI SKVWFLCSCK LFQSDGIPCA HIFSVMKAEL ILKLPDSLVL KRWTMDVGKP  780
VNLHNLSDRN LQMVRYASLA SEIKSICFPA SMTEGGTKKM KCEIAKLAKP AHDRRESQNH  840
SLLQNLIHRH QLHVGSDAHS FTGFSVGINA EHYARSLPPG EFRTYFYWV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-66	FAR1 family protein