PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011329.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 364aa MW: 41693.6 Da PI: 7.5253

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011329.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.4e-54	11	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g Rmu_sc0011329.1_g000004.1 11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAG 93 69**************************.9***********952444443456********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrle Rmu_sc0011329.1_g000004.1 94 FWKATGRDKAIHLSDSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141 ********************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MMSTGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC 60 RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSDSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL EDHHDNINVH EVQEDGWVVC RVFKKKNHIN RGFQPEFGHH 180 QEVEHDLITH MKASGSHAQV VLDHHHHHQP KQNHHHHLEA SLYDYPNNFD GSMHLPQLFS 240 PESAAAAAAN NSSSFLSAPN TNMSALNPLD LECSQNLLKL TSTTAGSCGL TMQQQQQQQQ 300 EMRSFNGDWS FLDKLLQSHH PQPQDHHHVA TAAATTSTTQ RLFPFQYLGC SGSTTHVDIL 360 KFSK

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MMSTGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSDSK RIGMRKTLVF  120
YTGRAPHGQK TDWIMHEYRL EDHHDNINVH EVQEDGWVVC RVFKKKNHIN RGFQPEFGHH  180
QEVEHDLITH MKASGSHAQV VLDHHHHHQP KQNHHHHLEA SLYDYPNNFD GSMHLPQLFS  240
PESAAAAAAN NSSSFLSAPN TNMSALNPLD LECSQNLLKL TSTTAGSCGL TMQQQQQQQQ  300
EMRSFNGDWS FLDKLLQSHH PQPQDHHHVA TAAATTSTTQ RLFPFQYLGC SGSTTHVDIL  360
KFSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	1e-105	NAC family protein