PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010966.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 379aa MW: 42167.4 Da PI: 8.0484

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010966.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.7e-32	93	149	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers ++++ei+Y+g+Hnh+ Rmu_sc0010966.1_g000003.1 93 DDRYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-TGEITEIIYKGQHNHD 149 8**************************************.9************7 PP
2	WRKY	106.9	1e-33	264	322	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Rmu_sc0010966.1_g000003.1 264 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYNGCNVRKHVERAASDPKAVITTYEGKHNHD 322 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MQSPFGISHQ QALAHVTALA QSNMQMQADY QSSLVAAPTE SQTSNPPSNP NEASQQQTAP 60 STSELGSSMV QSSEASHPDK KYPSSHATDR PADDRYNWRK YGQKQVKGSE YPRSYYKCTH 120 LNCPVKKKVE RSPTGEITEI IYKGQHNHDP PQPNKRAKDG GGQNGHMDSQ PKLENGLQRR 180 VGDSNRSSEA VPERDYEHAQ TAPVQLPSDS EDLGDAETRE EGDVDEPNPK RRNIDGVASE 240 VALPHKTVTE PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TYNGCNVRKH 300 VERAASDPKA VITTYEGKHN HDVPAARNSS HNIANNNASQ FKPPTVVAAE KHPLLKGREF 360 GNNDQRPVLL QLKEEQIAV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MQSPFGISHQ QALAHVTALA QSNMQMQADY QSSLVAAPTE SQTSNPPSNP NEASQQQTAP  60
STSELGSSMV QSSEASHPDK KYPSSHATDR PADDRYNWRK YGQKQVKGSE YPRSYYKCTH  120
LNCPVKKKVE RSPTGEITEI IYKGQHNHDP PQPNKRAKDG GGQNGHMDSQ PKLENGLQRR  180
VGDSNRSSEA VPERDYEHAQ TAPVQLPSDS EDLGDAETRE EGDVDEPNPK RRNIDGVASE  240
VALPHKTVTE PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TYNGCNVRKH  300
VERAASDPKA VITTYEGKHN HDVPAARNSS HNIANNNASQ FKPPTVVAAE KHPLLKGREF  360
GNNDQRPVLL QLKEEQIAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-105	WRKY family protein