PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0010928.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GeBP | ||||||||
Protein Properties | Length: 300aa MW: 34952.5 Da PI: 6.533 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 77.7 | 1.9e-24 | 102 | 196 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskeh 84 +r+ws+eDe+ lL+ ++d++++ ++++ fy++v+ + + ++sk+ l eKi rLKkK ++ v+k ++g+e++f+++h Rmu_sc0010928.1_g000001.1 102 RKRIWSKEDELELLKNFLDYRTRPR--TANETTSFYDQVNPKFKDQFSKRKLAEKIARLKKKHRNVVNKmgNNNGQEFRFRNPH 183 68******************77766..6689**************************************88899********** PP DUF573 85 dqkifelskkiWg 97 d+ if++s++iW Rmu_sc0010928.1_g000001.1 184 DRAIFDISHRIWA 196 ************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MPWPLLKWIM YTSSSSSSSS EDFSDAEDEG TSKKGNDHGR DPNKQGEQNH DDDSNEDDFS 60 YKPQEDETSN SSDYTFTINE PRRKRRRIDN KEDSTIVSFK RRKRIWSKED ELELLKNFLD 120 YRTRPRTANE TTSFYDQVNP KFKDQFSKRK LAEKIARLKK KHRNVVNKMG NNNGQEFRFR 180 NPHDRAIFDI SHRIWAESPL YNVQEKNVVV DSHDVGSSKA SFDEKHNNGD DEGNTDVREM 240 IIGLAMNPIP LSLSNYGGRG GEVVDEKWKE QQILELEAYS KRLELVQHQV KAALDDLRSK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 104 | RRKRRRIDNKEDSTIVSFKRRKR |
2 | 83 | 87 | RKRRR |
3 | 83 | 105 | RRKRRRIDNKEDSTIVSFKRRKR |
4 | 84 | 88 | KRRRI |
5 | 84 | 106 | RRKRRRIDNKEDSTIVSFKRRKR |
6 | 85 | 107 | RRKRRRIDNKEDSTIVSFKRRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-23 | GeBP family protein |