PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010928.1_g000001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GeBP
Protein Properties Length: 300aa    MW: 34952.5 Da    PI: 6.533
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010928.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57377.71.9e-24102196397
                     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskeh 84 
                                 +r+ws+eDe+ lL+ ++d++++      ++++ fy++v+ + + ++sk+ l eKi rLKkK ++ v+k   ++g+e++f+++h
  Rmu_sc0010928.1_g000001.1 102 RKRIWSKEDELELLKNFLDYRTRPR--TANETTSFYDQVNPKFKDQFSKRKLAEKIARLKKKHRNVVNKmgNNNGQEFRFRNPH 183
                                68******************77766..6689**************************************88899********** PP

                     DUF573  85 dqkifelskkiWg 97 
                                d+ if++s++iW 
  Rmu_sc0010928.1_g000001.1 184 DRAIFDISHRIWA 196
                                ************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MPWPLLKWIM YTSSSSSSSS EDFSDAEDEG TSKKGNDHGR DPNKQGEQNH DDDSNEDDFS  60
YKPQEDETSN SSDYTFTINE PRRKRRRIDN KEDSTIVSFK RRKRIWSKED ELELLKNFLD  120
YRTRPRTANE TTSFYDQVNP KFKDQFSKRK LAEKIARLKK KHRNVVNKMG NNNGQEFRFR  180
NPHDRAIFDI SHRIWAESPL YNVQEKNVVV DSHDVGSSKA SFDEKHNNGD DEGNTDVREM  240
IIGLAMNPIP LSLSNYGGRG GEVVDEKWKE QQILELEAYS KRLELVQHQV KAALDDLRSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182104RRKRRRIDNKEDSTIVSFKRRKR
28387RKRRR
383105RRKRRRIDNKEDSTIVSFKRRKR
48488KRRRI
584106RRKRRRIDNKEDSTIVSFKRRKR
685107RRKRRRIDNKEDSTIVSFKRRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-23GeBP family protein