PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010342.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 572aa MW: 62560.2 Da PI: 8.543

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010342.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	7.9e-18	475	525	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp +ng +r++lg++ t+e+A a+++a+ kl+g Rmu_sc0010342.1_g000008.1 475 HFRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKLRG 525 69*****.*******9987..***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MPPCRFDTTT QKQQQNLCNS FKPKLNLETL RTGPPVTVPF SDATKACLQV ASSHNSILAI 60 HCHLQAHQSQ KPGTIEQLPF NSNTTSTREA LPLPSNTTPN IDDSPVTIVN KISASILIFS 120 KPSSPPLIPK DTAHEGVNPE PPPDANIGST MSGPKIAQSS GKSICGCLSL IYLGTLMVTS 180 SRLRTRLNLL AKVLQIQAFK FCDVRLTVDR VGVLGRDGGI NGGALLLRFW KLGIAILFLD 240 LACLGHFRGG DGDLCSRRSL TGSHDFVSIT TRLICFRGAD VGSLHPTGSN GDASLRVRMS 300 KRGIPPPQVS PAPPFPIWGY FQMGDSPPPP PYFPFSLYEL FWIHGTASPV AWRIIESAVE 360 INMYGQTTLE SVDSDLALLE SIRQHLLGDH MEPPATIFGG DVDDIIPLFF PSSTAASTCL 420 SGLFTTENWW ESALKPEDSE SEAVSTPEEE EVTLRKQAQN ASVKRDVHAP RVERHFRGVR 480 RRPWGKYAAE IRDPAKNGAR VWLGTYETPE DAGLAYDRAA FKLRGCKAKL NFPHLIGSNS 540 VEPVRVTPKR RRSPEQSSSA SEDNESPKAK KR

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MPPCRFDTTT QKQQQNLCNS FKPKLNLETL RTGPPVTVPF SDATKACLQV ASSHNSILAI  60
HCHLQAHQSQ KPGTIEQLPF NSNTTSTREA LPLPSNTTPN IDDSPVTIVN KISASILIFS  120
KPSSPPLIPK DTAHEGVNPE PPPDANIGST MSGPKIAQSS GKSICGCLSL IYLGTLMVTS  180
SRLRTRLNLL AKVLQIQAFK FCDVRLTVDR VGVLGRDGGI NGGALLLRFW KLGIAILFLD  240
LACLGHFRGG DGDLCSRRSL TGSHDFVSIT TRLICFRGAD VGSLHPTGSN GDASLRVRMS  300
KRGIPPPQVS PAPPFPIWGY FQMGDSPPPP PYFPFSLYEL FWIHGTASPV AWRIIESAVE  360
INMYGQTTLE SVDSDLALLE SIRQHLLGDH MEPPATIFGG DVDDIIPLFF PSSTAASTCL  420
SGLFTTENWW ESALKPEDSE SEAVSTPEEE EVTLRKQAQN ASVKRDVHAP RVERHFRGVR  480
RRPWGKYAAE IRDPAKNGAR VWLGTYETPE DAGLAYDRAA FKLRGCKAKL NFPHLIGSNS  540
VEPVRVTPKR RRSPEQSSSA SEDNESPKAK KR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-36	ERF family protein