PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010280.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 286aa    MW: 32377.8 Da    PI: 6.4005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010280.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09170212855
                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + r RR+ri ++ +eL +l+P+       K++ ae+L+ A +YIk Lq
  Rmu_sc0010280.1_g000020.1 170 AARERRRRITEKTNELGRLVPSG-----SKMNTAEMLQAAYKYIKFLQ 212
                                6699******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MAAMSTTFCT DWGSLQLLSN IHSPNPDYDH MFSFQTQQDE LAAARILGLD YSLALDDPNP  60
LLLSQTLFSD QEFLLPLDDH EYYYHDEYPK RQKTHQQFHS SFNGFVPSPS MIPEFVQPQL  120
PLPPPEIQIQ QQSAAQLYAN CRLSNKDIST AAKVKANSNG GVSLSPQSIA ARERRRRITE  180
KTNELGRLVP SGSKMNTAEM LQAAYKYIKF LQAQVAMLKL MDSMQEKKGQ RLHNQEGLQV  240
LASPIVQEKL YSEEKCLVSR EFVETLANNQ DIQSKPLLKD SIAKLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.17e-23bHLH family protein