PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010190.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 376aa MW: 41970.9 Da PI: 8.2148

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010190.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.1	9.9e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yL +kv++ +++ ++++ vd++k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk Rmu_sc0010190.1_g000022.1 5 LPPGFRFHPTDEELITYYLGRKVSDVSFTS-QAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWK 87 79***********************999.88***********988999************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +tgkdke+l+ +g lvg+kktLvfy+grap+gekt+Wvmheyrle Rmu_sc0010190.1_g000022.1 88 TTGKDKEILR-QGVLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 131 *****9.99****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MQENLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YRGRAPRGEK 120 TNWVMHEYRL ENKHHPFKSS TSKEEWVVCR VFQKSVALKK PQQITSSSPQ SVDSLGETNS 180 MINEFGDVEL PNFMNNIANS SSTGFISNNM SIPEGNNYNV IDNKRINNDV NMISTTLNMN 240 NWLGAREAAA SGAILPAAAL GSWPSSLLSP SNLSSVNSLL LRALQLRSSS ASTNSTIYQQ 300 PIRDATAAGL EDHYSSFMAA QQQQQQQPGL MSHFGTDHNM NSSNLQASSS SKDQVMDSVP 360 QSQQHPGQPF NLDSIW

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MQENLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YRGRAPRGEK  120
TNWVMHEYRL ENKHHPFKSS TSKEEWVVCR VFQKSVALKK PQQITSSSPQ SVDSLGETNS  180
MINEFGDVEL PNFMNNIANS SSTGFISNNM SIPEGNNYNV IDNKRINNDV NMISTTLNMN  240
NWLGAREAAA SGAILPAAAL GSWPSSLLSP SNLSSVNSLL LRALQLRSSS ASTNSTIYQQ  300
PIRDATAAGL EDHYSSFMAA QQQQQQQPGL MSHFGTDHNM NSSNLQASSS SKDQVMDSVP  360
QSQQHPGQPF NLDSIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-101	NAC family protein