PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009897.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 410aa MW: 46012.7 Da PI: 6.0799

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009897.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	79.5	3e-25	149	214	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+kf++ll+ +++++++ln++ak L +v ++RRiYDi+NVLe++nl+ k +kn++rwkg Rmu_sc0009897.1_g000004.1 149 RFDSSLGLLTKKFVRLLQDTKDRTLDLNKAAKVL---EV--QKRRIYDITNVLEGVNLLVKVSKNHVRWKG 214 6789****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MEDPSRLPRP TQFQYHRLHS HSLQAPTPSS LPSNPRRVRH FTPPPDDEDS KPLSLSDKPL 60 SSRADAYAAF SKLELGRIKE EADDCEAQTS AQATAADQKK VLNDPVSTIP KSWRGVQKIS 120 KSKVAKPIKS ETVNAESQQN GVTPVTTCRF DSSLGLLTKK FVRLLQDTKD RTLDLNKAAK 180 VLEVQKRRIY DITNVLEGVN LLVKVSKNHV RWKGHDVPGE LDDQVFKLKE EVESLCAEEC 240 RLNDAIRERR ELIRTVKEDR NNKKYLFLTE GDVLSLPCFQ NQTLIAIKAP HASTIEVLDP 300 DEDIDFPQGQ YRMTVRSATG QIDCYLLSNY QGQQEGIAVK QEDSTGSSPC NNTGYCRMED 360 GGMSPEFHSL PGAEASSGMQ KIVLSHLDAN DDYWFRSEPE VSLTDLWATN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MEDPSRLPRP TQFQYHRLHS HSLQAPTPSS LPSNPRRVRH FTPPPDDEDS KPLSLSDKPL  60
SSRADAYAAF SKLELGRIKE EADDCEAQTS AQATAADQKK VLNDPVSTIP KSWRGVQKIS  120
KSKVAKPIKS ETVNAESQQN GVTPVTTCRF DSSLGLLTKK FVRLLQDTKD RTLDLNKAAK  180
VLEVQKRRIY DITNVLEGVN LLVKVSKNHV RWKGHDVPGE LDDQVFKLKE EVESLCAEEC  240
RLNDAIRERR ELIRTVKEDR NNKKYLFLTE GDVLSLPCFQ NQTLIAIKAP HASTIEVLDP  300
DEDIDFPQGQ YRMTVRSATG QIDCYLLSNY QGQQEGIAVK QEDSTGSSPC NNTGYCRMED  360
GGMSPEFHSL PGAEASSGMQ KIVLSHLDAN DDYWFRSEPE VSLTDLWATN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.2	1e-86	E2F/DP family protein