PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009869.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 254aa    MW: 28860.4 Da    PI: 6.1621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009869.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Rmu_sc0009869.1_g000002.1 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLSKFAGLSRCGKSCRLRWLNYL 61
                               799*****************99************************97 PP
2Myb_DNA-binding56.37.5e-1867111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ T eE+e++++++++lG++ W++Ia+ ++ gRt++++k++w++ 
  Rmu_sc0009869.1_g000002.1  67 RGNYTNEEEEIIIRLHEKLGNK-WSAIAAQLQ-GRTDNEVKNHWHTN 111
                                899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVRTPCCDER GVKKGTWTPE EDRKLIAYVT RYGCWNWRQL SKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TNEEEEIIIR LHEKLGNKWS AIAAQLQGRT DNEVKNHWHT NLKKRLMMNK  120
HKASSVSITH DDHHEEVVPK SSDQPKTTAT ADFANAETTV DQIPQIDCFD YPELWSPQPS  180
SSVVSSMTTD TAVAITAADG LVVVDNATSA AMETIYGDNF WTEPFLADNS YNPTGFYTPL  240
MEPEFLYPSF DGAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-59MYB family protein