PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009480.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 341aa    MW: 38286.1 Da    PI: 8.0838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009480.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1095.6e-34591991128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                lp+G++F+Ptd+e++ ++L++kv +++      ++  e   +++   +i++++P++Lp  v++e +  +fF++ +k+y+tg+rk
  Rmu_sc0009480.1_g000005.1  59 LPAGVKFDPTDQEIL-QHLEAKVLTDTrklhplID--EfipTLEGEnGICSTHPEKLP-GVNKEGQIRHFFHRPSKAYTTGTRK 138
                                799***********9.99****9999956644322..22222333336**********.666677788**************** PP

                        NAM  75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                +r+++      + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Rmu_sc0009480.1_g000005.1 139 RRKVHteedgsETRWHKTGKTRPVLA-NGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 199
                                **744446555778************.999***********66589**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MTWHSDDDEE EERAIQSVAP SSATYPQSKN NKTNEISCPS CGHPIDIQDQ AGIHDLPGLP  60
AGVKFDPTDQ EILQHLEAKV LTDTRKLHPL IDEFIPTLEG ENGICSTHPE KLPGVNKEGQ  120
IRHFFHRPSK AYTTGTRKRR KVHTEEDGSE TRWHKTGKTR PVLANGAVKG FKKILVLYTN  180
YGRQRKPEKT NWVMHQYHLG NNEEEKDGEL VLSKVFYQTQ PRQCGMGTPG IRDGGPPLLN  240
PFDSHHHKGH VNIRSGQDGN SLPLPLPLPL PPKKAGVVEY YNHNQPGPFM NYDHPHLIQG  300
GQNRDIPAQL IPNMVLQGDG SSLFRYNTAD TSKGKLIERK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC family protein