PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009001.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 275aa    MW: 29940 Da    PI: 5.0681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009001.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-3081139259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY++eHnh+
  Rmu_sc0009001.1_g000011.1  81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLVITYSSEHNHP 139
                                69*************************998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGSPTFFNKH FMSDIDHDDY NNTTTSSTPE NSSGSPPPAF NDVVYSKIAS SPKKSSRRAV  60
QKRVVSIPIK ENSNTNTPPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER  120
SRVDPTTLVI TYSSEHNHPW PASRSHHGTK PGIKAETREE ETAAGQPEPD PEERLFAADL  180
GGGDEESSLV IIPSVVDEFG WFADMETTSS RVLESPIFAE SGGGADTDDV AGMVFPMGEE  240
DESLFADLGE LPECSLVFRH RRVGGGGVGP QAQIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-80WRKY family protein