PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008603.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 542aa MW: 60371.1 Da PI: 7.0373

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008603.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	7.1e-17	174	223	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Rmu_sc0008603.1_g000005.1 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223 78*****************......55**********************997 PP
2	AP2	41.8	2.6e-13	266	316	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Rmu_sc0008603.1_g000005.1 266 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 316 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MWDLNDSPDQ RPVDDESEGC SSQKTNSGDG DDDKGKRVGS VSNSSSSAVV IEDGSDVDED 60 AYPNANRKRG SKIFGFSVTD DDVDGADPQP VTRQFFPMDE SSEMEPTRAG GAVGAAAASP 120 SSSFPRAHWV GVKFCQADSG GPGKAAEPSP QQQQQQQQQQ PMKKSRRGPR SRSSQYRGVT 180 FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NIDDYEEDLK 240 QMSNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE 300 IDAARAYDKA AIKCNGKEAV TNFDPSIYES ELNSTEPSSI NAGDHNLDLS LGNSKSKKNN 360 PAFGTAQNHT HQNAAMEQQQ QPSASMQFEA DWRNNQGFRP KPREDNEMRR RDGYLENETM 420 QLLLRTNLQS PSPTQMHKYG QFNQFRNPAG ETPAQMPHHF PPHTFNPPNY QIQFPSSSEV 480 GGRIGSDLTL SMSDRQQWQS GHPSELFLNA AASSGFPPQI RSPSQNGWLQ KNNGFHSLAR 540 RS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MWDLNDSPDQ RPVDDESEGC SSQKTNSGDG DDDKGKRVGS VSNSSSSAVV IEDGSDVDED  60
AYPNANRKRG SKIFGFSVTD DDVDGADPQP VTRQFFPMDE SSEMEPTRAG GAVGAAAASP  120
SSSFPRAHWV GVKFCQADSG GPGKAAEPSP QQQQQQQQQQ PMKKSRRGPR SRSSQYRGVT  180
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NIDDYEEDLK  240
QMSNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE  300
IDAARAYDKA AIKCNGKEAV TNFDPSIYES ELNSTEPSSI NAGDHNLDLS LGNSKSKKNN  360
PAFGTAQNHT HQNAAMEQQQ QPSASMQFEA DWRNNQGFRP KPREDNEMRR RDGYLENETM  420
QLLLRTNLQS PSPTQMHKYG QFNQFRNPAG ETPAQMPHHF PPHTFNPPNY QIQFPSSSEV  480
GGRIGSDLTL SMSDRQQWQS GHPSELFLNA AASSGFPPQI RSPSQNGWLQ KNNGFHSLAR  540
RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-123	AP2 family protein