PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008563.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 574aa MW: 64235.2 Da PI: 4.7899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008563.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.8e-52	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+e+d++k+ePwdLp + +++++ ew+fF+++dkky++g r nrat++gy Rmu_sc0008563.1_g000014.1 13 LPLGFRFRPTDEELIDFYLRSKINGNDKQV-SVIREIDVCKWEPWDLPdlSVIQTQDPEWFFFCPQDKKYPNGFRLNRATSAGY 95 699**********************999.99**********96447888999********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatgkd++++s + +lvg+kktLvf++grapkg++t+Wvmheyr+ Rmu_sc0008563.1_g000014.1 96 WKATGKDRRIKS-GANLVGMKKTLVFHTGRAPKGKRTNWVMHEYRA 140 ********.999**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MVMDMGVVSL SSLPLGFRFR PTDEELIDFY LRSKINGNDK QVSVIREIDV CKWEPWDLPD 60 LSVIQTQDPE WFFFCPQDKK YPNGFRLNRA TSAGYWKATG KDRRIKSGAN LVGMKKTLVF 120 HTGRAPKGKR TNWVMHEYRA TQQELDGTHP GQSPFVLCRL FKKQDESIEI SNCDETEPAV 180 SSPSVVKSPL EDTQSAQALV PPSPSCQVQP EKLPTRAECT NADNYDGTAS DPLPISECPS 240 NSCNDYDGPG QLDLPLEEYL SRFYDPEEEP LFSPMHSHME VEHCYPGSNG LNNGHRALQF 300 PNDSNDQDAE ISEFLSTIFN SSEECSFEDL DTQICETKNV VSIKNNGSCN DADTKLNEVL 360 YMEELQTPIW LEGNIDRKGP MQIATTPQNY EQSSRIEVSS NHSNALLSPS GGTGIRIMTR 420 QTPPTSTVRQ SIMTQGEAPR RLMCQNKLQI GSIQCRNMSQ NLHYRPEDHE RKLIAVEESR 480 DPEKIASSDT AFDAGNALDE PLETLIVESS TQTISATPNI TSMGSILTGK KVPSVVLKAS 540 LAGHYIWSFA FMFRVVVGAI LLMIFASMWG FHKF

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MVMDMGVVSL SSLPLGFRFR PTDEELIDFY LRSKINGNDK QVSVIREIDV CKWEPWDLPD  60
LSVIQTQDPE WFFFCPQDKK YPNGFRLNRA TSAGYWKATG KDRRIKSGAN LVGMKKTLVF  120
HTGRAPKGKR TNWVMHEYRA TQQELDGTHP GQSPFVLCRL FKKQDESIEI SNCDETEPAV  180
SSPSVVKSPL EDTQSAQALV PPSPSCQVQP EKLPTRAECT NADNYDGTAS DPLPISECPS  240
NSCNDYDGPG QLDLPLEEYL SRFYDPEEEP LFSPMHSHME VEHCYPGSNG LNNGHRALQF  300
PNDSNDQDAE ISEFLSTIFN SSEECSFEDL DTQICETKNV VSIKNNGSCN DADTKLNEVL  360
YMEELQTPIW LEGNIDRKGP MQIATTPQNY EQSSRIEVSS NHSNALLSPS GGTGIRIMTR  420
QTPPTSTVRQ SIMTQGEAPR RLMCQNKLQI GSIQCRNMSQ NLHYRPEDHE RKLIAVEESR  480
DPEKIASSDT AFDAGNALDE PLETLIVESS TQTISATPNI TSMGSILTGK KVPSVVLKAS  540
LAGHYIWSFA FMFRVVVGAI LLMIFASMWG FHKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	9e-91	NAC family protein