PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008518.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 283aa MW: 31561.2 Da PI: 10.3944

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008518.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.9	9.8e-17	14	102	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt++e +aLi + ++++++l+r++lk+++W++v++ + ++++ qC +k+e+l+kry+ +k++++ r +++ s ++ Rmu_sc0008518.1_g000014.1 14 CWTDDEAQALISVFKDKWSSLGRTNLKANDWDDVAATLaaqfPLVSPSKTAAQCHNKIEKLRKRYRSEKQRASTR-PGRFSPWA 96 8***********************************5443334558999********************98.78888999 PP trihelix 81 yfdqle 86 +++ +e Rmu_sc0008518.1_g000014.1 97 LYRFME 102 999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MSSPTPRRRF PPLCWTDDEA QALISVFKDK WSSLGRTNLK ANDWDDVAAT LAAQFPLVSP 60 SKTAAQCHNK IEKLRKRYRS EKQRASTRPG RFSPWALYRF MEELEGESGK GSGHTARKGE 120 GNSSSRFLAD LDEFVDVRSG GGDAGFPVKS LGHRNLAPLF SPKMKLKKNE SSGFLRKFGG 180 VESSGVGVND LGGSSGLLRS VREVDPVEEM VSSIQLLGEK YMKVEKRKME MAREIVMMQM 240 DMEMKQTQVI MESQQQIVNA CVSALLDSKK KKKRKMKAVS TDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	275	KKKKKRK
2	269	276	KKKKKRKM
3	270	275	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-40	Trihelix family protein