PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008496.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 399aa MW: 44960.4 Da PI: 4.9738

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008496.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.8	1.3e-13	106	147	1	46
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 s ykGVr++k +g+++AeIrd + r r ++g+f+taeeA a+ Rmu_sc0008496.1_g000007.1 106 SVYKGVRRRK-WGKYAAEIRDpF-----RgVREWIGTFDTAEEASVAY 147 78***998.******66.....56************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MPGIRTQVLN QDMCYKKLMA KQPRKEEDTS FKKKVRIMYT DPYATDSSSE DDEQCNATEY 60 QSVPRKKVFV SEIVVGGMQD ESCVSGGRIG NTNKSDGSKK NHRSYSVYKG VRRRKWGKYA 120 AEIRDPFRGV REWIGTFDTA EEASVAYQNR RLLFDNMKLE LKRKTEYKDL QLSNEAFKSS 180 HLTVESNHQY ECQSFHLLRE SQDSSVAAAA NETFSYEETA SLFCHPSPSS VLDIPPSKAA 240 LGIRLSNGEV FQPEGSVQPL SKEELSNLKF PEVPISSAIS AEEGYVRPLS EEELSVLKFP 300 EVPISSAIIA EEGSVQPLSE EEHFNLKFTQ VPILSPIRTE VWGFMNLGFV DNDIFDGLDQ 360 FVGRSDIVDL PVHCHGNGEN ISLPPSKFLM SDLAGFYWD

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MPGIRTQVLN QDMCYKKLMA KQPRKEEDTS FKKKVRIMYT DPYATDSSSE DDEQCNATEY  60
QSVPRKKVFV SEIVVGGMQD ESCVSGGRIG NTNKSDGSKK NHRSYSVYKG VRRRKWGKYA  120
AEIRDPFRGV REWIGTFDTA EEASVAYQNR RLLFDNMKLE LKRKTEYKDL QLSNEAFKSS  180
HLTVESNHQY ECQSFHLLRE SQDSSVAAAA NETFSYEETA SLFCHPSPSS VLDIPPSKAA  240
LGIRLSNGEV FQPEGSVQPL SKEELSNLKF PEVPISSAIS AEEGYVRPLS EEELSVLKFP  300
EVPISSAIIA EEGSVQPLSE EEHFNLKFTQ VPILSPIRTE VWGFMNLGFV DNDIFDGLDQ  360
FVGRSDIVDL PVHCHGNGEN ISLPPSKFLM SDLAGFYWD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	115	KGVRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	8e-25	ERF family protein