PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008159.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 778aa    MW: 85448.9 Da    PI: 6.343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008159.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.51e-994147762373
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 ++L+++Ae+v +g+++ aqa+Larl+++ sp g+p+qR+a+yf+eAL+  l+ + + ++   p+++ ++ +++ ++ a+k+fs
  Rmu_sc0008159.1_g000016.1 414 LDQLYKAAEMVGTGNFSHAQAILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPATS--PPTRTPTPFDVIFKMGAYKVFS 495
                                679**************************************************9555555..6788888889************ PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167
                                evsP+++f ++t+Nqa+leav++++++Hi+Dfdi+ G++W++++q+L  R+  + +psl+iT+++sp+++++ el+ ++++L++
  Rmu_sc0008159.1_g000016.1 496 EVSPLIQFVNFTCNQALLEAVSEADQIHIVDFDIGFGAHWASFMQELPLRNrgGASPSLKITAFASPSTHHTVELNLMRDNLTQ 579
                                ************************************************99976779**************************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                                fA+e+g+ fe +v+  + l d +  +L   r + +Ea+aVn+ +   +  +++++l++    +L++vk+lsPk+vv  ++ +d+
  Rmu_sc0008159.1_g000016.1 580 FADEIGLGFELEVVNID-LLDQNSYSLpffRANDNEAVAVNFPI--WSSSNQPAALPN----LLRFVKQLSPKIVVSLDRGCDR 656
                                *************7444.4444455552226666********99..555667888888....********************** PP

                       GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                ++ +F +++ +al+ y  l++sl+a    +s++ +k+Er+ll+++i++ v  + +       ++  W+  + +aGF+p+++s++
  Rmu_sc0008159.1_g000016.1 657 SDLPFPQHIRQALQSYINLLESLDAV-NVTSDAVNKIERFLLQPKIESTVLGRLRT----PDKMPLWKTLFASAGFTPLSFSNF 735
                                ***********************665.579********************998887....9999******************** PP

                       GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +++qa++++++   +g++ve++++slvl+W++r+L+s+SaW
  Rmu_sc0008159.1_g000016.1 736 TETQAECVVKRSTARGFHVEKRQESLVLCWQRRELISASAW 776
                                ***************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    
MPFQFQQQGK GVLEITAASI CDWNHKKEEE LFFNNSFVSN EPTSVLHMRR SPSPPTSAST  60
LSSSFNGGGN GNTTTPLLQD TSPVGPEPDT AAARSSSKDE WTCELQSIPS GGLEAVTGSG  120
GGRCGGLGME DWETMLSETA ASPGQDQSLL RWISGDVDDA SFGLKQLLQS GNNSNSLEFD  180
GNAGLGMVDQ GSGFDHIGSS VSGPNLGFSG GSGFNGKMGF VPSSSGPLNY KVSNVGLMNN  240
NGGNNNFANS ALPVSLPHGM VYQNHQQFEN PDEKPQILNP QMFMNQHQSQ LPHQNPNFFM  300
PVTYAQQEQH FLQSQPKRHN PGGGGGGLDP SSQIHQKVQY SDPGHEFLLR KQHLQQQQQQ  360
QQPHFGNFPP GMQFLPQQHH TQPRPVVVPK QKVGGEEMAA AHQNQQQMLQ HSLLDQLYKA  420
AEMVGTGNFS HAQAILARLN HQLSPVGKPL QRAAFYFKEA LQLLLLMNNP ATSPPTRTPT  480
PFDVIFKMGA YKVFSEVSPL IQFVNFTCNQ ALLEAVSEAD QIHIVDFDIG FGAHWASFMQ  540
ELPLRNRGGA SPSLKITAFA SPSTHHTVEL NLMRDNLTQF ADEIGLGFEL EVVNIDLLDQ  600
NSYSLPFFRA NDNEAVAVNF PIWSSSNQPA ALPNLLRFVK QLSPKIVVSL DRGCDRSDLP  660
FPQHIRQALQ SYINLLESLD AVNVTSDAVN KIERFLLQPK IESTVLGRLR TPDKMPLWKT  720
LFASAGFTPL SFSNFTETQA ECVVKRSTAR GFHVEKRQES LVLCWQRREL ISASAWSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-117GRAS family protein