PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008155.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 410aa MW: 45060.6 Da PI: 6.7061

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008155.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.6e-18	37	82	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Ede l ++v+q+G ++W+ Iar ++ gR++k+c++rw + Rmu_sc0008155.1_g000001.1 37 RGSWSPKEDEMLTRLVTQFGARNWSVIARGIP-GRSGKSCRLRWCNQ 82 89****************************.*********985 PP
2	Myb_DNA-binding	53.8	4.3e-17	89	133	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Rmu_sc0008155.1_g000001.1 89 RKPFSDEEDRIIVAAHATHGNR-WAIIAKLLP-GRTDNAIKNHWNST 133 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MTVPNDAASK LDSHRAEPDA SSSLADDGGE VAAGKVRGSW SPKEDEMLTR LVTQFGARNW 60 SVIARGIPGR SGKSCRLRWC NQLNPGVKRK PFSDEEDRII VAAHATHGNR WAIIAKLLPG 120 RTDNAIKNHW NSTLKRGRKY IPRTRNMKED SSLERSKASS EETVSAGNLS SVRTPEGREV 180 LIIDNSFNQL DGRCQTEDGV AVTELKDNST LVSELKEEST LCRPVARVSA FSAYNPSNGP 240 SNGSIVPRPV PIHGPLVQTS NLDFDFCNSL EGDCNEPMVP LRCGHGCCDR SGGHFQSSLL 300 GPEFIDYEEP PSFSSPEFIS CATDVNNIAW IKSGLENRET MRVAENVASQ RFSQGAAATP 360 QMGYYEMNMM NGHMRFVEGQ NRLMGMMTEM LSTPMPRQTF AMPTEVKGLS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MTVPNDAASK LDSHRAEPDA SSSLADDGGE VAAGKVRGSW SPKEDEMLTR LVTQFGARNW  60
SVIARGIPGR SGKSCRLRWC NQLNPGVKRK PFSDEEDRII VAAHATHGNR WAIIAKLLPG  120
RTDNAIKNHW NSTLKRGRKY IPRTRNMKED SSLERSKASS EETVSAGNLS SVRTPEGREV  180
LIIDNSFNQL DGRCQTEDGV AVTELKDNST LVSELKEEST LCRPVARVSA FSAYNPSNGP  240
SNGSIVPRPV PIHGPLVQTS NLDFDFCNSL EGDCNEPMVP LRCGHGCCDR SGGHFQSSLL  300
GPEFIDYEEP PSFSSPEFIS CATDVNNIAW IKSGLENRET MRVAENVASQ RFSQGAAATP  360
QMGYYEMNMM NGHMRFVEGQ NRLMGMMTEM LSTPMPRQTF AMPTEVKGLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	5e-87	MYB family protein