PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008149.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 558aa    MW: 62549.8 Da    PI: 6.7468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008149.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.25.4e-1371765522374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalk 82 
                                 ++L+ cA+av+++dl +aq+++ +l+++++ +g+p++Rl ay++e+L ar a+s+s+++kal+++e ++ +   sse l++++
  Rmu_sc0008149.1_g000012.1 176 NQVLVFCAKAVADNDLLMAQWMMDELRQMVAVSGEPIERLGAYMLEGLVARRASSGSSICKALRCKEPARCKepaSSELLSYMH 259
                                689***************************************************************99987789899******* PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                +++ev+P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g+r
  Rmu_sc0008149.1_g000012.1 260 ILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLSIVGKR 343
                                *******************************************************************888789999******** PP

                       GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                L+k+Ae ++vpfef++ +a +  d++le+L vkp +Eala n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe++
  Rmu_sc0008149.1_g000012.1 344 LSKLAEMFKVPFEFHA-TAISGCDVQLENLGVKPgEEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESN 426
                                ****************.8999*************999*********************************************** PP

                       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                +n++ F+ rf+e+l+yy+a+f+s++++lpr+ +eri+vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGF+p+pls+
  Rmu_sc0008149.1_g000012.1 427 TNTAAFFPRFVETLNYYTAMFESIDVTLPRNRKERINVEQHCLAREIVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSS 510
                                ************************************************************************************ PP

                       GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++++++ll+++++  yr++e++g+l+lgWk+r Lv+ +aW+
  Rmu_sc0008149.1_g000012.1 511 LVNATIETLLKNYSD-KYRLQERDGALYLGWKNRDLVASCAWK 552
                                **************5.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MQASKQHRSS GMSKRLHYQP MQEVEAYCLP PFRVLDHQPP YNESSQSTHS TAQSFRERYC  60
TLESSSANGS YNTLYNSPST VSVSPNGSPV SQHDQDSHYQ YHSPDHTYGS SISGSCITDD  120
ATDFKYKLKE LETAMLGDSN IFDNYCSSLQ NGASNTRPEV DSWGQIMDSI SKKDLNQVLV  180
FCAKAVADND LLMAQWMMDE LRQMVAVSGE PIERLGAYML EGLVARRASS GSSICKALRC  240
KEPARCKEPA SSELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDENRVH IIDFQIGQGS  300
QWLTLIQAFA ARPGGPPHIR ITGIDDSMSA YARGGGLSIV GKRLSKLAEM FKVPFEFHAT  360
AISGCDVQLE NLGVKPGEEA LAMNFAFMLH HMPDESVSTQ NHRDRLLRLV KSLSPKVVTL  420
VEQESNTNTA AFFPRFVETL NYYTAMFESI DVTLPRNRKE RINVEQHCLA REIVNIIACE  480
GVERVERHEL LGKWRSRFAM AGFTPYPLSS LVNATIETLL KNYSDKYRLQ ERDGALYLGW  540
KNRDLVASCA WKCKPGTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein