PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008093.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 1726aa MW: 193878 Da PI: 5.4883

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008093.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.2e-18	22	78	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR t++qle+Le++++ ++yps++ r+eL+ kl+L++rq ++WF+ rR k++k Rmu_sc0008093.1_g000001.1 22 RTKRKMKTRSQLEVLEQAYAAEQYPSESVRAELSLKLDLSDRQLQMWFCHRRLKDRK 78 689****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1726 aa Download sequence
METGSEGEKT RAEAQAQEGE IRTKRKMKTR SQLEVLEQAY AAEQYPSESV RAELSLKLDL 60 SDRQLQMWFC HRRLKDRKPT PTTGKRQRKD SPAGTTGVVS EEMAGSEPPP QQLIIEARAV 120 AFVEAQLGEP FREDGPILGL EFDPLPPGAF GSSVGVATVG QQKQSGWPYS ANIYEQSNAK 180 PIKGASRTVH EYQFLPEKPT VRTDTYERAA PSHHYGSPTE SRHARIPLST VSSFIHGNEQ 240 VPTVYRFQSQ MAGLNLLSQQ GRAGHLLPSA AEEYGNVHGK NFTNITMDAH FSAHPINQLN 300 NPFIPFARSV AHDEDDVLRL ERKHKSEEAR IMREVEAHEK RIRKELEKQD ILRRKREEQI 360 RKEMERIDRE RRKEEERLLR EKQREEERYL REQRRELERK EKFLQKESIR AEKMRQKEEL 420 RREKEAARLK AANERAIARK NAKESMELIE DECLELMELA ASSKELPSML SLDYETLQNL 480 ESFRDMRSTF PPKSVQLKKP FGIQPWIDSE ENIGNLLMAW RFLITFVDVL GLWPFTLDEF 540 VQAFHDYDSR LLGEIHISLL RSIIKDIEDV ARIPSMGVGA NQNCAANPGG GHPQIVEGAY 600 AWGFDIKSWK CNLNPLTWPE ILRQFSVSAG FGPQLKKRDV EPAYLHEDNE GNDVKDIISN 660 LRSGVAVKNA FAIMQERGFS NPRKSRHCLT PGTVKFAAFH VLSLEGSKGL NILEVADRIQ 720 KSGLRDLTTS KTPEASIAAA LSRDSKLFER TAPSTYCVRA PYRKDTSDSE AVLSAARERI 780 QIFNSRIFDV EGADEAERDE ESESDAVQDP EFDDLGTEIN PKIVAQNSEE ARKVSDGISL 840 ESGNGSYEVS KAPGDLRNVT EGIPSINSEA SIKVEDAGCS LDSVDAAGIC NNVANHDQED 900 TEIDDSNPGE PWVQGLTEGE YSDLSVEERL NALAALIGVA IEGNSIRIVL EERLDAANAL 960 KKQMWAVAQV DKRRLKEEHV IKMQYTPFIG NKTEQSLTIP SENRQSPSPT VDEKNIETTV 1020 KLSVLQEQMV DPQNEQNYIN SFPSVRNLQM QEYSVGPDNH PFQQPGLIAD KSHKQLKSYI 1080 GHKAEEMYVY RSLPLGQDRR HNRYWQFITS ASRNDPGCGR IFVELHDGRW RLIDSEEGFD 1140 GLLASLDVRG YRESHLQTML QKTEIFFKET VRRNKLHSNR GRHIKDTAKT EDVEMPSGYD 1200 CSGGTDSPTS SVSVADSDML ESSMTFSIEL GKNETEKTGA LNRYQDLERW ILKESVGSSI 1260 LCADKNGEKR CPQLLDICNS CRGIFYFEEN HCHSCHRTFG KGEIDFSQHV VLCKEKLKLN 1320 SDCNLRGSSS SPLRIRLLKV LLALTEVSVP LEALQPLWTD MNRKSWGRKL HSSSTAEDLL 1380 QVLASLESAV KIEYLSSNFE TTGELLYSSN EKGRVTSNSS SPDSVAVLPW VPLTTAAVAL 1440 RLMEFDAAIS NMLQQKLVTQ KDKESGDFKK LPTRSAVMKS SKNEEISGTP HQSEDSKEGH 1500 WEYLGSGLTG SGHGRGRGRT GGRRVPKKAI GLRGNPRKKS RVAAKDKLVQ VQVLKWKGRP 1560 RGRGGRKRGN RSIRGKETTF NRIIKIGGER TGPKDSVYYK SPDDLVEENW NVGETAAENA 1620 SGSGRSEYEV ENGDASGDEF DHVHVDDYAG GFNGKSDDLM EGGEYNMEGD EDDVDDECEG 1680 AQDSDFDGAR YINGGWDEEE HIADDGQQDM ELGEGTRSSS SDYSDL

Sequence ? help Back to Top

Protein Sequence Length: 1726 aa Download sequence

METGSEGEKT RAEAQAQEGE IRTKRKMKTR SQLEVLEQAY AAEQYPSESV RAELSLKLDL  60
SDRQLQMWFC HRRLKDRKPT PTTGKRQRKD SPAGTTGVVS EEMAGSEPPP QQLIIEARAV  120
AFVEAQLGEP FREDGPILGL EFDPLPPGAF GSSVGVATVG QQKQSGWPYS ANIYEQSNAK  180
PIKGASRTVH EYQFLPEKPT VRTDTYERAA PSHHYGSPTE SRHARIPLST VSSFIHGNEQ  240
VPTVYRFQSQ MAGLNLLSQQ GRAGHLLPSA AEEYGNVHGK NFTNITMDAH FSAHPINQLN  300
NPFIPFARSV AHDEDDVLRL ERKHKSEEAR IMREVEAHEK RIRKELEKQD ILRRKREEQI  360
RKEMERIDRE RRKEEERLLR EKQREEERYL REQRRELERK EKFLQKESIR AEKMRQKEEL  420
RREKEAARLK AANERAIARK NAKESMELIE DECLELMELA ASSKELPSML SLDYETLQNL  480
ESFRDMRSTF PPKSVQLKKP FGIQPWIDSE ENIGNLLMAW RFLITFVDVL GLWPFTLDEF  540
VQAFHDYDSR LLGEIHISLL RSIIKDIEDV ARIPSMGVGA NQNCAANPGG GHPQIVEGAY  600
AWGFDIKSWK CNLNPLTWPE ILRQFSVSAG FGPQLKKRDV EPAYLHEDNE GNDVKDIISN  660
LRSGVAVKNA FAIMQERGFS NPRKSRHCLT PGTVKFAAFH VLSLEGSKGL NILEVADRIQ  720
KSGLRDLTTS KTPEASIAAA LSRDSKLFER TAPSTYCVRA PYRKDTSDSE AVLSAARERI  780
QIFNSRIFDV EGADEAERDE ESESDAVQDP EFDDLGTEIN PKIVAQNSEE ARKVSDGISL  840
ESGNGSYEVS KAPGDLRNVT EGIPSINSEA SIKVEDAGCS LDSVDAAGIC NNVANHDQED  900
TEIDDSNPGE PWVQGLTEGE YSDLSVEERL NALAALIGVA IEGNSIRIVL EERLDAANAL  960
KKQMWAVAQV DKRRLKEEHV IKMQYTPFIG NKTEQSLTIP SENRQSPSPT VDEKNIETTV  1020
KLSVLQEQMV DPQNEQNYIN SFPSVRNLQM QEYSVGPDNH PFQQPGLIAD KSHKQLKSYI  1080
GHKAEEMYVY RSLPLGQDRR HNRYWQFITS ASRNDPGCGR IFVELHDGRW RLIDSEEGFD  1140
GLLASLDVRG YRESHLQTML QKTEIFFKET VRRNKLHSNR GRHIKDTAKT EDVEMPSGYD  1200
CSGGTDSPTS SVSVADSDML ESSMTFSIEL GKNETEKTGA LNRYQDLERW ILKESVGSSI  1260
LCADKNGEKR CPQLLDICNS CRGIFYFEEN HCHSCHRTFG KGEIDFSQHV VLCKEKLKLN  1320
SDCNLRGSSS SPLRIRLLKV LLALTEVSVP LEALQPLWTD MNRKSWGRKL HSSSTAEDLL  1380
QVLASLESAV KIEYLSSNFE TTGELLYSSN EKGRVTSNSS SPDSVAVLPW VPLTTAAVAL  1440
RLMEFDAAIS NMLQQKLVTQ KDKESGDFKK LPTRSAVMKS SKNEEISGTP HQSEDSKEGH  1500
WEYLGSGLTG SGHGRGRGRT GGRRVPKKAI GLRGNPRKKS RVAAKDKLVQ VQVLKWKGRP  1560
RGRGGRKRGN RSIRGKETTF NRIIKIGGER TGPKDSVYYK SPDDLVEENW NVGETAAENA  1620
SGSGRSEYEV ENGDASGDEF DHVHVDDYAG GFNGKSDDLM EGGEYNMEGD EDDVDDECEG  1680
AQDSDFDGAR YINGGWDEEE HIADDGQQDM ELGEGTRSSS SDYSDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein