PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0007811.1_g000007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 388aa MW: 42468.4 Da PI: 5.8164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 43 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd+ l ++v ++G ++W++Iar + gR++k+c++rw + Rmu_sc0007811.1_g000007.1 43 RGPWSPEEDKVLSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 88 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.1 | 2e-18 | 95 | 139 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ Rmu_sc0007811.1_g000007.1 95 RKPFSEEEDQMIIAAHTIHGNK-WAAIARLLP-GRTDNAIKNHWNST 139 789*******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 388 aa Download sequence |
MEPELAEDSV AVIEVDASED DAGSGKDEAA KGGKGKKGKS KVRGPWSPEE DKVLSRLVSK 60 FGARNWSLIA RGISGRSGKS CRLRWCNQLD PILKRKPFSE EEDQMIIAAH TIHGNKWAAI 120 ARLLPGRTDN AIKNHWNSTL RRRDPDRMKS ESGNMVEDIS LDKTIASSEE TLSNGDVNSS 180 KSMEGKEVSS LEYTDDQHED KVSTDGLYSN EAREPCTLFR PVARVSAFSV YNHLGGQDPS 240 SSLQRPIPVQ GPLVQAAKLD VGICKLVEGI YGEWSVPDQC GHGCCCTQNG RNTENSLLGP 300 DFVEFSEPPC FPSFELAAIA TDISNLAWLK SGLENSSARV TGDAAGSIPS HASQGQLGHF 360 EESRMNHLFH HEERKDRLMS MKTNVLST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-108 | MYB family protein |