PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007543.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 367aa MW: 41536.2 Da PI: 9.3292

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007543.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.4	2.9e-55	187	290	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa Rmu_sc0007543.1_g000006.1 187 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAA 270 89**988888******************************************************************** PP NF-YC 82 avtrtdifdflvdivprdel 101 a+trtdifdflvdivpr++l Rmu_sc0007543.1_g000006.1 271 AITRTDIFDFLVDIVPREDL 290 ***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MRALKIYHGV YHSWVGLQTW DTKVIVFHNR IRKVKRKVIA GTTNQNWRFF IVGRVDVNTP 60 PTPIPPTQLH SFPVSYFIRF PNFSQPNLKA LQVVEQNPEP ENKQTDKRMD QQGHGHPTTM 120 GVPGAGQASY GVNPYQPSQI MGLSPTGSVG MMQSPTQPGG PSAPSQLAQH QAYQHIHQQQ 180 QQQLQQQLQN FWSGQYQEIE QANDFKNHSL PLARIKKIMK ADEDVRMISA EAPVIFARAC 240 EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASIPR 300 GGNVPVVGPA DGLPYYYMPA QHPPQVGAPG MMVGKPVMDQ NMYGQPTHPY MAQPAWPQQQ 360 QPHKDSE

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MRALKIYHGV YHSWVGLQTW DTKVIVFHNR IRKVKRKVIA GTTNQNWRFF IVGRVDVNTP  60
PTPIPPTQLH SFPVSYFIRF PNFSQPNLKA LQVVEQNPEP ENKQTDKRMD QQGHGHPTTM  120
GVPGAGQASY GVNPYQPSQI MGLSPTGSVG MMQSPTQPGG PSAPSQLAQH QAYQHIHQQQ  180
QQQLQQQLQN FWSGQYQEIE QANDFKNHSL PLARIKKIMK ADEDVRMISA EAPVIFARAC  240
EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASIPR  300
GGNVPVVGPA DGLPYYYMPA QHPPQVGAPG MMVGKPVMDQ NMYGQPTHPY MAQPAWPQQQ  360
QPHKDSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	266	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-77	NF-YC family protein