PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007470.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 456aa MW: 49776.4 Da PI: 8.8771

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007470.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.3e-17	150	199	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aaka+++a+ k++g Rmu_sc0007470.1_g000004.1 150 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAAIKFRG 199 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MLDLNVDVIS STVDQSSYDD KARALEAEKL REDSGSSDSS VVNAEEDSYS NNTSPFIFDI 60 LKKDKNGLCN NKEDQIVPSP EFATRPLFPV TGDGGGGGEL GLLASSNSTS RPQWLNLSFA 120 ESGGQAELKV VQQKQQQARK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF 180 DTAHSAAKAY DRAAIKFRGV DADINFVLSD YEEDLKQMRH LNKEEFVHVL RRQSNGASRG 240 NSKLRGVAAA AAAAAAVPKI GPFEVRMGQL IPGNKLIKRN GREGVTNFDP SIYEGAVVVD 300 ASTEGSGHNL DLSLGISQPS TGQKRKAFEI HTKEKPMVNG SASAAGGQPL NATEMLSKHP 360 ALYSEIYPGF LHKTEEMATD YHKRIQAVSS PRFSNWAWQM NGNNNNVTPM QVFSIAASSG 420 FSSSIATLPP SATNQLPPIL QDNSTYNLRH PFPTSL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MLDLNVDVIS STVDQSSYDD KARALEAEKL REDSGSSDSS VVNAEEDSYS NNTSPFIFDI  60
LKKDKNGLCN NKEDQIVPSP EFATRPLFPV TGDGGGGGEL GLLASSNSTS RPQWLNLSFA  120
ESGGQAELKV VQQKQQQARK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF  180
DTAHSAAKAY DRAAIKFRGV DADINFVLSD YEEDLKQMRH LNKEEFVHVL RRQSNGASRG  240
NSKLRGVAAA AAAAAAVPKI GPFEVRMGQL IPGNKLIKRN GREGVTNFDP SIYEGAVVVD  300
ASTEGSGHNL DLSLGISQPS TGQKRKAFEI HTKEKPMVNG SASAAGGQPL NATEMLSKHP  360
ALYSEIYPGF LHKTEEMATD YHKRIQAVSS PRFSNWAWQM NGNNNNVTPM QVFSIAASSG  420
FSSSIATLPP SATNQLPPIL QDNSTYNLRH PFPTSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	4e-65	AP2 family protein