PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007451.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 750aa MW: 86626.4 Da PI: 8.1156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007451.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.2e-21	38	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++++vCskeg+++ + kk r+r++tr +Cka+++v k+ gk++vt +++ Rmu_sc0007451.1_g000006.1 38 FYKSYAKESGFDVKSYTSEKK--NGVIVRKEYVCSKEGTSKLTGKK-----RNRNQTRAKCKARIVVVKRAtIGKYVVTIFVEG 114 ************9998887..**************99888.....99*******999888879******* PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0007451.1_g000006.1 115 HSHPLT 120 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MESEQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSYTSEKKNG 60 VIVRKEYVCS KEGTSKLTGK KRNRNQTRAK CKARIVVVKR ATIGKYVVTI FVEGHSHPLT 120 TPRRKHLTKI HREVSLVHRS LTKQLTAVNV PTCTQFDFLR VHSGGLENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSFI FKIESDNKNR ITHIFWADAI SRRSYKFYGD 240 VVIFDTTYNT NTYSLIFAPL VGVNNHGQTI ILACAFLSNE TIDSFVWFFK EFLDAMPGDA 300 PRMIITDQDP AMTKAISEVL PQTFHRYCSW HILNKFSEKI DPGKYTRYYY EFQDCIWNSE 360 NRDEFDASWT SIVESSGLSD NGWLKTMYDI RSTWVPAYVN HMFSAGMSSS QRAESGHAFY 420 KRFVSKENTL LDFMVQFNRA ITRQRHMELM EDHVDINEKP NFASPFEMAE QMARVYTHEC 480 FKEFYDQLSQ CCNYRFEFSH ENDTYMVYIA LRKKMENPKG REIIYAKESD FVSCSCKKFE 540 TVGIPCRHIM AFLIFILLVD RLPDQYILKR WTKSGKTERV FDDLGVEITD NRDLLARRSR 600 LCQYAVDVID KVMGSEEASG LFLDSLKSVL EQYNSMVADG ETVKSAIVLA QQKSLPSQHI 660 YNEPVQVRAK GCGKRLKAGK EKGRLKAAKK ANGKGRFCHG CKKNDQQHDK RNCPELKNKN 720 GISIPQTGED RSDSSTDEEE YSSTGVDESA

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MESEQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSYTSEKKNG  60
VIVRKEYVCS KEGTSKLTGK KRNRNQTRAK CKARIVVVKR ATIGKYVVTI FVEGHSHPLT  120
TPRRKHLTKI HREVSLVHRS LTKQLTAVNV PTCTQFDFLR VHSGGLENIG CLQQDIYNYK  180
RDCRKEVKGH DGDMLHEYFL LEKEKDPSFI FKIESDNKNR ITHIFWADAI SRRSYKFYGD  240
VVIFDTTYNT NTYSLIFAPL VGVNNHGQTI ILACAFLSNE TIDSFVWFFK EFLDAMPGDA  300
PRMIITDQDP AMTKAISEVL PQTFHRYCSW HILNKFSEKI DPGKYTRYYY EFQDCIWNSE  360
NRDEFDASWT SIVESSGLSD NGWLKTMYDI RSTWVPAYVN HMFSAGMSSS QRAESGHAFY  420
KRFVSKENTL LDFMVQFNRA ITRQRHMELM EDHVDINEKP NFASPFEMAE QMARVYTHEC  480
FKEFYDQLSQ CCNYRFEFSH ENDTYMVYIA LRKKMENPKG REIIYAKESD FVSCSCKKFE  540
TVGIPCRHIM AFLIFILLVD RLPDQYILKR WTKSGKTERV FDDLGVEITD NRDLLARRSR  600
LCQYAVDVID KVMGSEEASG LFLDSLKSVL EQYNSMVADG ETVKSAIVLA QQKSLPSQHI  660
YNEPVQVRAK GCGKRLKAGK EKGRLKAAKK ANGKGRFCHG CKKNDQQHDK RNCPELKNKN  720
GISIPQTGED RSDSSTDEEE YSSTGVDESA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1 family protein