PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007311.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 355aa MW: 39451.2 Da PI: 6.3989

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007311.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1.1e-26	51	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 rWt+qe+l+Li+++r e+r + g+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kki+e+e +r++e+ Rmu_sc0007311.1_g000003.1 51 RWTRQEILVLIKGKRAAESRGGGGRtarsefgsgQVEPKWAAVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIREWEAQRKDET 134 8************9999999664555667777************************************************ PP trihelix 76 sstcpyfdqle 86 +s +++ ++l+ Rmu_sc0007311.1_g000003.1 135 ESFWVMRNDLR 145 999*9999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MALEFEQQHH QQQLSLTTNP VDGDTNGVDA AAGRASAEAG DDSSKAPRLP RWTRQEILVL 60 IKGKRAAESR GGGGRTARSE FGSGQVEPKW AAVSSYCKKH GVNRGPVQCR KRWSNLAGDF 120 KKIREWEAQR KDETESFWVM RNDLRRERKL PGFFDKEVYD IMEAVSGAAA AAPVTLALAP 180 PPLMVSEAEN NLKEGLTDEV EKLFDSRQGP TDDGLFSDYE QEESGRSPDK EVRLKSPTAI 240 PAPLPISEKL FKPIQASQGQ GAAGQKQPPS IPEMGSTSQD RKRKRFAVDG EEETFSLQNQ 300 LIEVMERNGK MLADYFVAQN SHSQLDREQR KEHSDSLIAV LNKLADAFMR IADKL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MALEFEQQHH QQQLSLTTNP VDGDTNGVDA AAGRASAEAG DDSSKAPRLP RWTRQEILVL  60
IKGKRAAESR GGGGRTARSE FGSGQVEPKW AAVSSYCKKH GVNRGPVQCR KRWSNLAGDF  120
KKIREWEAQR KDETESFWVM RNDLRRERKL PGFFDKEVYD IMEAVSGAAA AAPVTLALAP  180
PPLMVSEAEN NLKEGLTDEV EKLFDSRQGP TDDGLFSDYE QEESGRSPDK EVRLKSPTAI  240
PAPLPISEKL FKPIQASQGQ GAAGQKQPPS IPEMGSTSQD RKRKRFAVDG EEETFSLQNQ  300
LIEVMERNGK MLADYFVAQN SHSQLDREQR KEHSDSLIAV LNKLADAFMR IADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-92	Trihelix family protein