PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007300.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 344aa MW: 39269.5 Da PI: 4.8057

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007300.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.5e-56	3	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhPtdeelv +yL +k++g ++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gy Rmu_sc0007300.1_g000012.1 3 LPPGFRFHPTDEELVAYYLDRKINGCTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGY 85 79**************************.99**********96435566888********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatgkd++v s ++++vg+kktLv+y+grap+g++t+Wvmheyrl Rmu_sc0007300.1_g000012.1 86 WKATGKDRAVNS-NRRAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 130 *******9.9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSLPPGFRFH PTDEELVAYY LDRKINGCTI ELEIIPEVDL YKCEPWDLPD KSFLPSKDME 60 WYFYSPRDRK YPNGSRTNRA TRAGYWKATG KDRAVNSNRR AVGMKKTLVY YRGRAPHGSR 120 TNWVMHEYRL TDSVCGSPSS SLKDSYALCR IFKKTIQIPK NNKEEKTIKN TLLNEKKLRE 180 DTSTGINEGE ASRGIETDQD YENYSNPDYP KFLSDTSSSD LTQGTPTETG IADDLQAPFA 240 SDEANSSANL YSIGAHCSSN NLFQDTYMPS DTSFENYQFP YPPLELEDFP MINLAAETNT 300 SKPQIIDDYM SCDRLKDYMN GTLEEIFSLC SSQDNNHAAR PMQD

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSLPPGFRFH PTDEELVAYY LDRKINGCTI ELEIIPEVDL YKCEPWDLPD KSFLPSKDME  60
WYFYSPRDRK YPNGSRTNRA TRAGYWKATG KDRAVNSNRR AVGMKKTLVY YRGRAPHGSR  120
TNWVMHEYRL TDSVCGSPSS SLKDSYALCR IFKKTIQIPK NNKEEKTIKN TLLNEKKLRE  180
DTSTGINEGE ASRGIETDQD YENYSNPDYP KFLSDTSSSD LTQGTPTETG IADDLQAPFA  240
SDEANSSANL YSIGAHCSSN NLFQDTYMPS DTSFENYQFP YPPLELEDFP MINLAAETNT  300
SKPQIIDDYM SCDRLKDYMN GTLEEIFSLC SSQDNNHAAR PMQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-107	NAC family protein