PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007300.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 338aa    MW: 37569.2 Da    PI: 7.0583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007300.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181360148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg W++eEd++l++ v+ +G g+W++++++ g+ R++k+c++rw +yl
  Rmu_sc0007300.1_g000006.1 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPKHAGLERCGKSCRLRWINYL 60
                               788*******************************************97 PP
2Myb_DNA-binding55.91e-1766109146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg++T eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Rmu_sc0007300.1_g000006.1  66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                                89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP KHAGLERCGK SCRLRWINYL  60
RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPQTHNLISS HKRSVASNKI AGSNAKLQSH INQKRPVFTV NNMSQIIDSS TEINYSISPP  180
IVPLSNAQPP TVQPIMATPT DNQYPVHNPN SGWTSVTDIP TFPDSTQSIT SASSSSAFGH  240
LDGSNCIWAA GADPFEAAPG AMELQGEQSK GQVVQVEQEK EQLLEMEMKA MQDMDIAASF  300
DQNSSFDFSL VEYCSTLMSG VVPHDHVNYS AADFTWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-87MYB family protein