PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007200.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 377aa MW: 42574.1 Da PI: 5.0115

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007200.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G g+W++ ++ g+ R++k+c++rw +yl Rmu_sc0007200.1_g000002.1 17 RGPWSPSEDLRLISFIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 64 89****************************99**********97 PP
2	Myb_DNA-binding	53.4	6.1e-17	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l Rmu_sc0007200.1_g000002.1 70 RGNFTKEEEESIIKLHETWGNK-WSKIASHFP-GRTDNEIKNVWNTHL 115 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGGKGRTPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHGNW RALPKQAGLL RCGKSCRLRW 60 INYLRPDLKR GNFTKEEEES IIKLHETWGN KWSKIASHFP GRTDNEIKNV WNTHLRKRLA 120 LKKSCGDDQS KDLSSITSSS SSSSSASFQL SRGKPSVGST AEFEHQSNHE CNMSKNRNDC 180 ELPNSTTIQE KLDQNILMEV TNQVRVDDAK GVKTLTISSS FSSHDSSNGS SSSQGGGISR 240 PDDLVFDFEG AYEPQIADKE VFEIPFESDH DFWNMLDEFV PFQSNPEPLL PQADQTYQSS 300 NLELVESGKW LSYLESELGL EDSTKTEINN QDFVMKDATE QLVPEKYCDK LPKPAEIDQD 360 MDDYFGMWPS WPDNSGN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGGKGRTPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHGNW RALPKQAGLL RCGKSCRLRW  60
INYLRPDLKR GNFTKEEEES IIKLHETWGN KWSKIASHFP GRTDNEIKNV WNTHLRKRLA  120
LKKSCGDDQS KDLSSITSSS SSSSSASFQL SRGKPSVGST AEFEHQSNHE CNMSKNRNDC  180
ELPNSTTIQE KLDQNILMEV TNQVRVDDAK GVKTLTISSS FSSHDSSNGS SSSQGGGISR  240
PDDLVFDFEG AYEPQIADKE VFEIPFESDH DFWNMLDEFV PFQSNPEPLL PQADQTYQSS  300
NLELVESGKW LSYLESELGL EDSTKTEINN QDFVMKDATE QLVPEKYCDK LPKPAEIDQD  360
MDDYFGMWPS WPDNSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	3e-73	MYB family protein