PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0007188.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 36941.3 Da PI: 6.2503 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.8e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++lvd+++ G g+W++ ++ g++R++k+c++rw +yl Rmu_sc0007188.1_g000001.1 15 KGPWTTEEDQKLVDYINTNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++++++ G++ W++Ia +++ gRt++++k++w+++l Rmu_sc0007188.1_g000001.1 68 RGKFSEEEERVIINLHAVVGNK-WSKIATHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence |
MGRSPCCDDQ SGLKKGPWTT EEDQKLVDYI NTNGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEERVII NLHAVVGNKW SKIATHLPGR TDNEIKNFWN THLRKKLLQM 120 GLDPNTHKPR TDLNHLLNLS QLLSTANIGN MMTSTPWDNA LRLQASAAQL AKMQLLQNLY 180 MQVINSSVAP DIDNKTSTGL FGSQNINLFG GYFSGASTMV GGQEWNPDSI PGAPNELNTI 240 SNSLEGFEGL NSNINTNLMS SCYDIQSFKN QFAELVSASS PGSSTTNNQI ESTSTGDIPA 300 AGQSSPTSIF EAWEKLMDDD TSESYWKDIL QSMS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17785.1 | 2e-85 | MYB family protein |