PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0007180.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 232aa MW: 26646.9 Da PI: 7.7827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.7 | 1.4e-16 | 78 | 224 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................................... 47 fY Y+ +GFs rk+k ++ + + +++r++vCskeg+r+++ k Rmu_sc0007180.1_g000003.1 78 FYAYYSLAMGFSFRKEKLCRN-TAQVVVRRQLVCSKEGERKKRGKPdpsfaseiiscaqnlspphgtkqvckrktvnqkpived 160 9*****************999.7777*****************9999************************************* PP FAR1 48 ....................tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++++ +r+ tr +C+a++ ++ k +g+++v ++ +eHnH+la Rmu_sc0007180.1_g000003.1 161 adrrsmkrsgkqsgevehgkKRQRPPQRNITRGNCQARIIARRCKeSGVFRVVQFITEHNHALA 224 ***************9987555555699***************999****************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence |
MDESGMRFSE PNYHGWLVDE DDFSDEYEEL FSDEEASQSA NMDENLDCLH FNGKKYEDLR 60 SSDMIGVEFS SVEAVDTFYA YYSLAMGFSF RKEKLCRNTA QVVVRRQLVC SKEGERKKRG 120 KPDPSFASEI ISCAQNLSPP HGTKQVCKRK TVNQKPIVED ADRRSMKRSG KQSGEVEHGK 180 KRQRPPQRNI TRGNCQARII ARRCKESGVF RVVQFITEHN HALATTEFVP FL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 163 | 169 | RRSMKRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-07 | FAR1 family protein |