PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0006936.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Whirly | ||||||||
Protein Properties | Length: 228aa MW: 25229 Da PI: 10.1466 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 192.6 | 6.1e-60 | 54 | 188 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 s+yk+kaal++ +v+ptf++l+sg+++++r+G+++l++++a++erkyd ekkq falsatev++l++l++k+sce+fhdp++++ Rmu_sc0006936.1_g000006.1 54 SIYKGKAALSLSPVLPTFTKLESGSVVVERRGSVMLKFMPAIGERKYDSEKKQLFALSATEVGSLISLGPKDSCELFHDPSMQS 137 7*********************************************************************************** PP Whirly 85 sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 sn+G+vrk+l+++P++dG +f++l+v n+l+k+ esfsvPv+ aefav++++ Rmu_sc0006936.1_g000006.1 138 SNAGQVRKSLSIKPHADG--YFISLTVVNNLLKTRESFSVPVTTAEFAVMKTA 188 *****************5..9******************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MMQLLRVFSS SRNQLSKRAA LSLDSFTQST SFSTARQNFS AKGRIGDQVY APFSIYKGKA 60 ALSLSPVLPT FTKLESGSVV VERRGSVMLK FMPAIGERKY DSEKKQLFAL SATEVGSLIS 120 LGPKDSCELF HDPSMQSSNA GQVRKSLSIK PHADGYFISL TVVNNLLKTR ESFSVPVTTA 180 EFAVMKTACS FALPHIIGWD RLTNKVPRGI EVHKSEMAEP QLLDEWER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 9e-79 | Whirly family protein |