PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006850.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 453aa MW: 48805.4 Da PI: 7.8798

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006850.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2e-20	220	269	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Rmu_sc0006850.1_g000002.1 220 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 269 7******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MCLLKVANQR SSGDGGPFQA QNDDVVPVDY EEASGELMSN QLVQGVGLQR RPQSTVSPSM 60 FLRYSRPEAE MSAMVSALTH VVSGQRHVVS GSSGGVASSF GQVYSAASGN SPPLSAFSSN 120 NNNTSSSSGS WVGQKRGREE QTQALLMDQS NRPYGGGYAD FRATQPESST GATTTVYEDD 180 TKSVTTAGST VTATASTAVR STPSTAETVS PEETGERRRR YRGVRQRPWG KWAAEIRDPH 240 KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RAIPPQQPLQ NYAQSISSHS 300 ASTHLAPNRP VRPLQPPTQP LQHQQPLYQS QPFQGSPDLL RDYLDYSHLL QSSIDIHSQQ 360 QPQPTNFLEQ MYYNSQLASL QSSLLQQPPP SSSTVSSALP SSASSSASFP LLFSDHQQQL 420 SVFGAPQNQN PGGSSGFPAP SWSQSGHNHS SSG

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MCLLKVANQR SSGDGGPFQA QNDDVVPVDY EEASGELMSN QLVQGVGLQR RPQSTVSPSM  60
FLRYSRPEAE MSAMVSALTH VVSGQRHVVS GSSGGVASSF GQVYSAASGN SPPLSAFSSN  120
NNNTSSSSGS WVGQKRGREE QTQALLMDQS NRPYGGGYAD FRATQPESST GATTTVYEDD  180
TKSVTTAGST VTATASTAVR STPSTAETVS PEETGERRRR YRGVRQRPWG KWAAEIRDPH  240
KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RAIPPQQPLQ NYAQSISSHS  300
ASTHLAPNRP VRPLQPPTQP LQHQQPLYQS QPFQGSPDLL RDYLDYSHLL QSSIDIHSQQ  360
QPQPTNFLEQ MYYNSQLASL QSSLLQQPPP SSSTVSSALP SSASSSASFP LLFSDHQQQL  420
SVFGAPQNQN PGGSSGFPAP SWSQSGHNHS SSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	ERRRRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	1e-16	ERF family protein