PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0006577.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | SRS | ||||||||
Protein Properties | Length: 382aa MW: 42265.1 Da PI: 7.2135 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 25.3 | 4.3e-08 | 49 | 131 | 5 | 86 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv..kstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsal 86 + +C+ CGn a+ C +e C+ CC C+ hv t +p + + q +s+++++s ++++ + r+l s++ ++ Rmu_sc0006577.1_g000002.1 49 KPKCKVCGNVARSRCPFESCKSCCSRAQNPCHIHVlkANTTIPDKAPASSSPQFDHQSTETSSSGNSHRVASLRQL-SNNFAQF 131 568**********************999******953358888777666555554444444444444444444443.2333333 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence |
MAAASSPSPA LSATTSDASH APSAAVPAPP FSAAFRSETP TKTLRGLNKP KCKVCGNVAR 60 SRCPFESCKS CCSRAQNPCH IHVLKANTTI PDKAPASSSP QFDHQSTETS SSGNSHRVAS 120 LRQLSNNFAQ FNNVHITLRT KKPLTRKDAV ATNEWRFAKL KEFKDRNIEV ENEAFDRYMQ 180 NISLLEEVFS VNSNAEESIG DGSSISNHDM TTTEGDNGDM VSGLKLKLRS NPMRTSNFRK 240 RIQQIVDQGL KKLKTCESAD GDKEPSDQIE LDMGPRKGEN WRAARASALG DLIDKLNKAR 300 NEEDLQSCME MKTQLFNELK SMSSSELEDT ETAKKQTTKN DLETRKESQY LFPHLISTNE 360 IDQETLSSVN THFSSLEQIE GL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 2e-99 | SRS family protein |