PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0006572.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 434aa MW: 47636.8 Da PI: 6.6266 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.2e-15 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Rmu_sc0006572.1_g000001.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence |
MKPMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ 60 EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSILESSALP ITTGATAKRL KDVQQQQPPP 120 PADHHHQIML SSVLDHHGQV IRSSSSTEHD IMSNVYSAYG SYGAQQGCSW PTLAFNQAQA 180 QAAAAPHQAP FAAGINGMQL HYSPYGYGYG NAHAQRVWCK QEQDTNSNQE RSFHHQDDDH 240 LRQQLQLGGT HNFFHDHDQQ QQQQTSGLMG LMDSSAASME HSSGSNSVIY SGGDHHGNNN 300 GYGSSTTGTG GGYIMPMVMS TVVANDDQNQ ADGNNNNING FGDGDDQEAN IKAQQLGYDH 360 HPQNMFLGSS STIDPAYQHH ASNRNLYYHL PVQDDQHESS SVAVATSSTT CNMNWVPTAV 420 PTLAHPTFTV WNDT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17430.1 | 3e-57 | AP2 family protein |