PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0006510.1_g000017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 691aa MW: 77747.7 Da PI: 6.8353 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.4 | 2.5e-15 | 122 | 180 | 2 | 65 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W+++e laL+++r+ me+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ Rmu_sc0006510.1_g000017.1 122 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAEVGFKRSAEKCKEKFEEESRYFNNIN 180 ********************998.....9*******************************9887 PP | |||||||
2 | trihelix | 94.4 | 1.1e-29 | 460 | 551 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 rW+++evlaLi++r ++ ++ ++ k+plWe++s+ m+e g++r++k+Ckekwen+nk+++k+k+ +kkr s +s+ Rmu_sc0006510.1_g000017.1 460 RWPRDEVLALINLRCSLFNNGDQQDkdkdggaVKAPLWERISQGMSELGYKRNAKRCKEKWENINKYFRKTKDVNKKR-SLDSR 542 8**************888887764223344449********************************************8.9999* PP trihelix 78 tcpyfdqle 86 tcpyf+ql Rmu_sc0006510.1_g000017.1 543 TCPYFHQLS 551 *******95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence |
MFDGVPAEQL HQFIAASRTS LPLPLPNIPL SSFPNLQPFD HHHHHHHSYN IINPPPPTPQ 60 ELVQLQPPPH NQLLLPSVVL HRRANDQEKQ ENSTTLVLPS SNLEIERERT ASMPPELPSD 120 PWSNDELLAL LRIRSTMENW FPEFTWEHVS RKLAEVGFKR SAEKCKEKFE EESRYFNNIN 180 FNKNFRFLSE LEQLYQPPVE PPQNVAEDQP EKNTEKVVEV EKPSEELGNQ DKGQTALDPQ 240 ESPSNDQTVS ETQVEIVRAK SNNKKRKRQR RFEMLKGFCE DIVNKLMAQQ EETHSKLLED 300 MVRRDEEKLA KEEAWKKQEM DRMNKELETM AHEQAVAGDR QATIIQFLKK FTSSASTSSS 360 TNPSNGQKEN DQEPITSSIM VPSASNVHKS TTTTSFHTQN NPSTPTSLTE AIAPQSPSSS 420 TLSINPKLPI SSPPPENPSS DHLKTQNPSS DDKAQDLGKR WPRDEVLALI NLRCSLFNNG 480 DQQDKDKDGG AVKAPLWERI SQGMSELGYK RNAKRCKEKW ENINKYFRKT KDVNKKRSLD 540 SRTCPYFHQL STLYNQGILV PPSDHQAAAP ENRSPENQSS LAEGLAPILC TAAIRAQPSA 600 AAAELESPET RRTTRNTSLS ILDVVNGASP PIKSPKTGNP ANPTRVHPNN QIEATEKRSA 660 TPLGRKEDGD PTASPPNPSP TSPNRNTGYR M |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 270 | KRKRQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 3e-64 | Trihelix family protein |