PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006326.1_g000035.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 321aa    MW: 37805.8 Da    PI: 7.7577
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006326.1_g000035.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.56.9e-2134118290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                                fYn+YAke+GFs+r ++s + k++++ +k+++vC+k+g ++ e +k     r+r   ++gCk ++ v ++k  g++ ++ +++ 
  Rmu_sc0006326.1_g000035.1  34 FYNRYAKEAGFSIRSHSSATIKDKKQLMKKEYVCYKQGVPKVEGEK-----RKRGLPKVGCKERIAVVRKKeFGRYAISVFVEA 112
                                *****************************************99877.....999***********98887779*********** PP

                       FAR1  85 HnHela 90 
                                HnH+l+
  Rmu_sc0006326.1_g000035.1 113 HNHPLT 118
                                ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MESEDDQVYI PQVKVKLMPK LYQEFKTIDD VAAFYNRYAK EAGFSIRSHS SATIKDKKQL  60
MKKEYVCYKQ GVPKVEGEKR KRGLPKVGCK ERIAVVRKKE FGRYAISVFV EAHNHPLTSP  120
PRAGGIQNIG FIQRDLYNYG RTCREEKKGR DGDLLYMHFE NEKEKYSSFV YTMDGDEENR  180
VTWCFWAEGI QNIGFIQRDL YNYGRTCREE KKGRDGDLLY MHFENEKEKY SSFVYTMDGD  240
EENRVTWCFW AESISRRAYS FYGDVVIFDT TYNTNRYGMI FAPFTGVNNH GQTIIFSCAF  300
LNDETTDTFV WLFKEFLYAM P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-42FAR1 family protein