PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006313.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 358aa MW: 40018.2 Da PI: 8.4218

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006313.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.2	8.6e-13	53	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g Rmu_sc0006313.1_g000002.1 53 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 109 57*****************99998898888888******************98 PP
2	AP2	51.2	3e-16	152	203	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Rmu_sc0006313.1_g000002.1 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 203 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MAKTSQKIQK NTTPSSSNNS NTTTSTTTSS PPATKVKRTR KSVRRDSPPQ RSSIYRGVTR 60 HRWTGRYEAH LWDKNCWNES QNKKGRQGAY DDEEAAARAY DLAALKYWGQ DTILNLPVST 120 YEEELKEMDG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY 180 LGTYATQEEA ATAYDMAAIE YRGLNAVTNF DLSRYIKSLC PNNENVPNNT QPNPNADLSS 240 IQNPDSKVGL GFMPHNPSPS TSESMVAVPR QGNGSSASSA LGLLLQSPKF KEMLERTSVV 300 DCSSTTTLEP NMPRRSFPDD IQTYFDCQDL NSYAEGDDII FGELNSFASP VFHCELDA

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MAKTSQKIQK NTTPSSSNNS NTTTSTTTSS PPATKVKRTR KSVRRDSPPQ RSSIYRGVTR  60
HRWTGRYEAH LWDKNCWNES QNKKGRQGAY DDEEAAARAY DLAALKYWGQ DTILNLPVST  120
YEEELKEMDG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYATQEEA ATAYDMAAIE YRGLNAVTNF DLSRYIKSLC PNNENVPNNT QPNPNADLSS  240
IQNPDSKVGL GFMPHNPSPS TSESMVAVPR QGNGSSASSA LGLLLQSPKF KEMLERTSVV  300
DCSSTTTLEP NMPRRSFPDD IQTYFDCQDL NSYAEGDDII FGELNSFASP VFHCELDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-97	AP2 family protein